miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8574 3' -49.9 NC_002169.1 + 118936 0.66 0.996626
Target:  5'- gGCGGCGgcGUCGUCGu-UGUCGuCGGg -3'
miRNA:   3'- -UGCUGCacUAGCAGCuuACAGCuGUU- -5'
8574 3' -49.9 NC_002169.1 + 111649 0.66 0.996626
Target:  5'- aACGACGcGAUCGcaacggcaGAAUcGUCGACGc -3'
miRNA:   3'- -UGCUGCaCUAGCag------CUUA-CAGCUGUu -5'
8574 3' -49.9 NC_002169.1 + 1229 0.66 0.995343
Target:  5'- aGCGGCGcGucgcCGUCGAAccgucGUCGACGAg -3'
miRNA:   3'- -UGCUGCaCua--GCAGCUUa----CAGCUGUU- -5'
8574 3' -49.9 NC_002169.1 + 10823 0.66 0.995343
Target:  5'- cACGAUGUuugcuuUCGUCGAGgaucGUCGAUGAa -3'
miRNA:   3'- -UGCUGCAcu----AGCAGCUUa---CAGCUGUU- -5'
8574 3' -49.9 NC_002169.1 + 62597 0.66 0.994567
Target:  5'- aGCGAUGUGGUCGgcaGGAUcaUGACAc -3'
miRNA:   3'- -UGCUGCACUAGCag-CUUAcaGCUGUu -5'
8574 3' -49.9 NC_002169.1 + 60118 0.67 0.991476
Target:  5'- gGCGACGccGUCcacgucgGUCGAaauugGUGUCGACGAu -3'
miRNA:   3'- -UGCUGCacUAG-------CAGCU-----UACAGCUGUU- -5'
8574 3' -49.9 NC_002169.1 + 41458 0.67 0.990357
Target:  5'- aGCGuACGUGAcgaCGUCGAcgGcaaCGACAAa -3'
miRNA:   3'- -UGC-UGCACUa--GCAGCUuaCa--GCUGUU- -5'
8574 3' -49.9 NC_002169.1 + 95980 0.67 0.990357
Target:  5'- --aACGUGAUgGUCGAcgG-CGGCGAc -3'
miRNA:   3'- ugcUGCACUAgCAGCUuaCaGCUGUU- -5'
8574 3' -49.9 NC_002169.1 + 106016 0.67 0.990357
Target:  5'- aACG-UGUGuUCGUCGAAUGUCaucuACAAg -3'
miRNA:   3'- -UGCuGCACuAGCAGCUUACAGc---UGUU- -5'
8574 3' -49.9 NC_002169.1 + 107991 0.67 0.988982
Target:  5'- -gGACGUGAUCGcCGAuuucaacagacUGUaCGACAAa -3'
miRNA:   3'- ugCUGCACUAGCaGCUu----------ACA-GCUGUU- -5'
8574 3' -49.9 NC_002169.1 + 97083 0.68 0.985779
Target:  5'- gGCGAUGcGGUCGacgcugcCGAcgGUGUCGACGAc -3'
miRNA:   3'- -UGCUGCaCUAGCa------GCU--UACAGCUGUU- -5'
8574 3' -49.9 NC_002169.1 + 82690 0.68 0.985779
Target:  5'- uCGGCcaGAUCGUCGAAUGUuauggUGGCGGu -3'
miRNA:   3'- uGCUGcaCUAGCAGCUUACA-----GCUGUU- -5'
8574 3' -49.9 NC_002169.1 + 9263 0.68 0.984692
Target:  5'- aACGACGacaacuacaguaauaUcGUCGUCGAagaaaaagGUGUCGGCAAa -3'
miRNA:   3'- -UGCUGC---------------AcUAGCAGCU--------UACAGCUGUU- -5'
8574 3' -49.9 NC_002169.1 + 122833 0.68 0.981909
Target:  5'- cACGaACGaUGAUCGUgcaGAGUGUgGACGGg -3'
miRNA:   3'- -UGC-UGC-ACUAGCAg--CUUACAgCUGUU- -5'
8574 3' -49.9 NC_002169.1 + 70699 0.68 0.9797
Target:  5'- aACGACGUcGUCGUCGGcgggcuUGUCGuCGu -3'
miRNA:   3'- -UGCUGCAcUAGCAGCUu-----ACAGCuGUu -5'
8574 3' -49.9 NC_002169.1 + 85371 0.68 0.976791
Target:  5'- gGCGACGaGAUCGUCGAuguauucuggaGUCaGGCAAc -3'
miRNA:   3'- -UGCUGCaCUAGCAGCUua---------CAG-CUGUU- -5'
8574 3' -49.9 NC_002169.1 + 6761 0.69 0.96557
Target:  5'- cCGACGUcGAUgcuucugccgaCGUCGAugccgAUGUCGACAu -3'
miRNA:   3'- uGCUGCA-CUA-----------GCAGCU-----UACAGCUGUu -5'
8574 3' -49.9 NC_002169.1 + 43820 0.7 0.954356
Target:  5'- uUGACGUGGUUGUCGAAg--CGAUu- -3'
miRNA:   3'- uGCUGCACUAGCAGCUUacaGCUGuu -5'
8574 3' -49.9 NC_002169.1 + 91713 0.7 0.950126
Target:  5'- gACGGCGUcGUCGUCGAcaGUcaaGUCGugGAc -3'
miRNA:   3'- -UGCUGCAcUAGCAGCU--UA---CAGCugUU- -5'
8574 3' -49.9 NC_002169.1 + 69812 0.76 0.713804
Target:  5'- cCGAUGUGGUCGUCGA--GUCGAUu- -3'
miRNA:   3'- uGCUGCACUAGCAGCUuaCAGCUGuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.