Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8574 | 5' | -53.8 | NC_002169.1 | + | 128846 | 1.08 | 0.00536 |
Target: 5'- aACUCGUCGCCGUUGACGUUCCUCUCGu -3' miRNA: 3'- -UGAGCAGCGGCAACUGCAAGGAGAGC- -5' |
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8574 | 5' | -53.8 | NC_002169.1 | + | 3362 | 0.66 | 0.949852 |
Target: 5'- -gUCGUCGUCGUcGuCG-UCCUCgUCGg -3' miRNA: 3'- ugAGCAGCGGCAaCuGCaAGGAG-AGC- -5' |
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8574 | 5' | -53.8 | NC_002169.1 | + | 86764 | 0.67 | 0.945516 |
Target: 5'- -gUCGUCGUCGUUGAaaCGUa-CUUUCGa -3' miRNA: 3'- ugAGCAGCGGCAACU--GCAagGAGAGC- -5' |
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8574 | 5' | -53.8 | NC_002169.1 | + | 125791 | 0.68 | 0.908396 |
Target: 5'- -gUCGUUGUCGUUGGCGgcgCguaUCUCGu -3' miRNA: 3'- ugAGCAGCGGCAACUGCaa-Gg--AGAGC- -5' |
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8574 | 5' | -53.8 | NC_002169.1 | + | 135093 | 0.69 | 0.859631 |
Target: 5'- uGCUCGUCGUCGUcGuccuCG-UCCUCgUCGu -3' miRNA: 3'- -UGAGCAGCGGCAaCu---GCaAGGAG-AGC- -5' |
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8574 | 5' | -53.8 | NC_002169.1 | + | 26630 | 0.69 | 0.854947 |
Target: 5'- uCUCGUcccacacgcugacgaCGgCGUUGAUGUUCUUUUCGg -3' miRNA: 3'- uGAGCA---------------GCgGCAACUGCAAGGAGAGC- -5' |
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8574 | 5' | -53.8 | NC_002169.1 | + | 3549 | 0.75 | 0.550205 |
Target: 5'- aAUUCGUCGUCGUUGuCGUcCCUgUCGu -3' miRNA: 3'- -UGAGCAGCGGCAACuGCAaGGAgAGC- -5' |
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8574 | 5' | -53.8 | NC_002169.1 | + | 78907 | 0.67 | 0.925765 |
Target: 5'- -aUCGUCGUCGUcGuCGUcgUCgUCUCGg -3' miRNA: 3'- ugAGCAGCGGCAaCuGCA--AGgAGAGC- -5' |
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8574 | 5' | -53.8 | NC_002169.1 | + | 99799 | 0.67 | 0.925765 |
Target: 5'- -gUCGUCGUCGUcgagaucaUGGCGUacaaucUCCUCggCGg -3' miRNA: 3'- ugAGCAGCGGCA--------ACUGCA------AGGAGa-GC- -5' |
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8574 | 5' | -53.8 | NC_002169.1 | + | 122163 | 0.69 | 0.881894 |
Target: 5'- aAUUCGUCGUCGUUGACGcuauugCCg-UCGc -3' miRNA: 3'- -UGAGCAGCGGCAACUGCaa----GGagAGC- -5' |
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8574 | 5' | -53.8 | NC_002169.1 | + | 29330 | 0.74 | 0.621914 |
Target: 5'- uCUCGUCGCCGUUGacgcggauGCGUUCUggacaCUUGg -3' miRNA: 3'- uGAGCAGCGGCAAC--------UGCAAGGa----GAGC- -5' |
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8574 | 5' | -53.8 | NC_002169.1 | + | 71538 | 0.74 | 0.601274 |
Target: 5'- --aCGUUGUCGUUGACGUUCUgcacggugaUCUCGu -3' miRNA: 3'- ugaGCAGCGGCAACUGCAAGG---------AGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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