Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8576 | 5' | -50.7 | NC_002169.1 | + | 134243 | 1.14 | 0.004398 |
Target: 5'- cGCCGCCCAGAUUCGAAAUCAACGCGGa -3' miRNA: 3'- -CGGCGGGUCUAAGCUUUAGUUGCGCC- -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 53415 | 0.66 | 0.99378 |
Target: 5'- uGCCGCCgagaauguaugcuCAGAUcaaaagccggUCGGGA--AACGCGGc -3' miRNA: 3'- -CGGCGG-------------GUCUA----------AGCUUUagUUGCGCC- -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 53655 | 0.66 | 0.99292 |
Target: 5'- -aCGCCggCGGAUUCG-GAUCGAC-CGGc -3' miRNA: 3'- cgGCGG--GUCUAAGCuUUAGUUGcGCC- -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 1056 | 0.67 | 0.989354 |
Target: 5'- cGCUGCUCGucgacgacGGUUCGAcggCGACGCGc -3' miRNA: 3'- -CGGCGGGU--------CUAAGCUuuaGUUGCGCc -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 45689 | 0.67 | 0.986287 |
Target: 5'- uGUCGCCgAGAccuucgacgguUUCGAGuAUCuGCGCGa -3' miRNA: 3'- -CGGCGGgUCU-----------AAGCUU-UAGuUGCGCc -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 35116 | 0.67 | 0.986287 |
Target: 5'- cGCaauGCCCAGuAUUgCGAAcgCGACGCc- -3' miRNA: 3'- -CGg--CGGGUC-UAA-GCUUuaGUUGCGcc -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 19369 | 0.67 | 0.984334 |
Target: 5'- cGCCGCCCAuuuucauGAUUUGu--UCGuAgGCGGu -3' miRNA: 3'- -CGGCGGGU-------CUAAGCuuuAGU-UgCGCC- -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 77705 | 0.69 | 0.970087 |
Target: 5'- aGCCGCCU----UCGAGA-CAGCGCa- -3' miRNA: 3'- -CGGCGGGucuaAGCUUUaGUUGCGcc -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 45946 | 0.69 | 0.963626 |
Target: 5'- cGCCGCcgCCAGA-UCGAGA---GCGCGa -3' miRNA: 3'- -CGGCG--GGUCUaAGCUUUaguUGCGCc -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 1951 | 0.71 | 0.904559 |
Target: 5'- cGCCGCCgAuGGUgUCGuugucAUCGACGUGGg -3' miRNA: 3'- -CGGCGGgU-CUA-AGCuu---UAGUUGCGCC- -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 25699 | 0.72 | 0.869387 |
Target: 5'- aCCGCCgGGcgUCGccgcCAACGCGGc -3' miRNA: 3'- cGGCGGgUCuaAGCuuuaGUUGCGCC- -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 22148 | 0.73 | 0.845531 |
Target: 5'- -aCGCCCuGAcUUCGGcAGUgAGCGCGGg -3' miRNA: 3'- cgGCGGGuCU-AAGCU-UUAgUUGCGCC- -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 60785 | 0.68 | 0.982584 |
Target: 5'- -gCGCCgAGAUggCGGcaauGUCcGCGCGGg -3' miRNA: 3'- cgGCGGgUCUAa-GCUu---UAGuUGCGCC- -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 46129 | 0.67 | 0.986287 |
Target: 5'- cGCuCGCCCAGuc-CGAGacGUCGGuCGCGc -3' miRNA: 3'- -CG-GCGGGUCuaaGCUU--UAGUU-GCGCc -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 26212 | 0.67 | 0.986287 |
Target: 5'- cGCCGCCgauCAG-UUCGAGAUCGuuccACGUc- -3' miRNA: 3'- -CGGCGG---GUCuAAGCUUUAGU----UGCGcc -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 56758 | 0.67 | 0.990671 |
Target: 5'- cGgCGCCCGcGUUuaCGAGAUCGGCGuCGa -3' miRNA: 3'- -CgGCGGGUcUAA--GCUUUAGUUGC-GCc -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 18389 | 0.66 | 0.99292 |
Target: 5'- gGCgGCCguGAaUgGGuuAUCGACGUGGa -3' miRNA: 3'- -CGgCGGguCUaAgCUu-UAGUUGCGCC- -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 41483 | 0.66 | 0.994634 |
Target: 5'- aUCGCCC-GAUgccuauuUCGAAGUUAGCGUa- -3' miRNA: 3'- cGGCGGGuCUA-------AGCUUUAGUUGCGcc -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 133809 | 0.66 | 0.994714 |
Target: 5'- uGCCGUCaacaAGugcgUCGAcGUCGACGCc- -3' miRNA: 3'- -CGGCGGg---UCua--AGCUuUAGUUGCGcc -5' |
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8576 | 5' | -50.7 | NC_002169.1 | + | 22168 | 0.71 | 0.904559 |
Target: 5'- uGCCGCCgGGAaacUCccAAUCGAUGUGGa -3' miRNA: 3'- -CGGCGGgUCUa--AGcuUUAGUUGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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