Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
859 | 3' | -52.1 | NC_000898.1 | + | 719 | 0.66 | 0.986034 |
Target: 5'- -aGGgGCGGAGAAauguagagagAAGUGGGGCGAg -3' miRNA: 3'- caCUgUGCCUUUUgg--------UUCGCCUCGCU- -5' |
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859 | 3' | -52.1 | NC_000898.1 | + | 152978 | 0.66 | 0.986034 |
Target: 5'- aGUGGCccggccggaguGCGGuucAGCCu-GCGGGGUGAa -3' miRNA: 3'- -CACUG-----------UGCCuu-UUGGuuCGCCUCGCU- -5' |
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859 | 3' | -52.1 | NC_000898.1 | + | 153887 | 0.66 | 0.986034 |
Target: 5'- -aGGgGCGGAGAAauguagagagAAGUGGGGCGAg -3' miRNA: 3'- caCUgUGCCUUUUgg--------UUCGCCUCGCU- -5' |
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859 | 3' | -52.1 | NC_000898.1 | + | 14897 | 0.67 | 0.969763 |
Target: 5'- uGUGAcCAUGGAggaagAAAUgAAGCuGGGGCGGa -3' miRNA: 3'- -CACU-GUGCCU-----UUUGgUUCG-CCUCGCU- -5' |
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859 | 3' | -52.1 | NC_000898.1 | + | 3858 | 0.68 | 0.95592 |
Target: 5'- -aGGgAgGGggGACCGAG-GGGGCGu -3' miRNA: 3'- caCUgUgCCuuUUGGUUCgCCUCGCu -5' |
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859 | 3' | -52.1 | NC_000898.1 | + | 157026 | 0.68 | 0.95592 |
Target: 5'- -aGGgAgGGggGACCGAG-GGGGCGu -3' miRNA: 3'- caCUgUgCCuuUUGGUUCgCCUCGCu -5' |
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859 | 3' | -52.1 | NC_000898.1 | + | 62409 | 0.7 | 0.891125 |
Target: 5'- gGUGACucACGGGcu-UCGAGCGGAGaCGGa -3' miRNA: 3'- -CACUG--UGCCUuuuGGUUCGCCUC-GCU- -5' |
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859 | 3' | -52.1 | NC_000898.1 | + | 156554 | 0.7 | 0.910676 |
Target: 5'- -gGugGCGGAGGcggugcGCCAGGUGGGGgCGu -3' miRNA: 3'- caCugUGCCUUU------UGGUUCGCCUC-GCu -5' |
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859 | 3' | -52.1 | NC_000898.1 | + | 3387 | 0.7 | 0.910676 |
Target: 5'- -gGugGCGGAGGcggugcGCCAGGUGGGGgCGu -3' miRNA: 3'- caCugUGCCUUU------UGGUUCGCCUC-GCu -5' |
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859 | 3' | -52.1 | NC_000898.1 | + | 2782 | 0.71 | 0.869429 |
Target: 5'- -aGGCGCGGGAcAGCgGAcuGCGGGGCGu -3' miRNA: 3'- caCUGUGCCUU-UUGgUU--CGCCUCGCu -5' |
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859 | 3' | -52.1 | NC_000898.1 | + | 4392 | 0.71 | 0.869429 |
Target: 5'- -cGcACGCGGAAGGCCGGGCGuauaggaaGGGUGGc -3' miRNA: 3'- caC-UGUGCCUUUUGGUUCGC--------CUCGCU- -5' |
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859 | 3' | -52.1 | NC_000898.1 | + | 155950 | 0.71 | 0.869429 |
Target: 5'- -aGGCGCGGGAcAGCgGAcuGCGGGGCGu -3' miRNA: 3'- caCUGUGCCUU-UUGgUU--CGCCUCGCu -5' |
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859 | 3' | -52.1 | NC_000898.1 | + | 157559 | 0.71 | 0.869429 |
Target: 5'- -cGcACGCGGAAGGCCGGGCGuauaggaaGGGUGGc -3' miRNA: 3'- caC-UGUGCCUUUUGGUUCGC--------CUCGCU- -5' |
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859 | 3' | -52.1 | NC_000898.1 | + | 27234 | 0.73 | 0.764529 |
Target: 5'- --aAUACGGAGAgcuGCCGAGCuGAGCGGa -3' miRNA: 3'- cacUGUGCCUUU---UGGUUCGcCUCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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