Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
860 | 3' | -51.8 | NC_000898.1 | + | 104456 | 0.66 | 0.991585 |
Target: 5'- uUCUGGCCgcaUUCGUAcagauACGGAGGCAa -3' miRNA: 3'- -GGGCUGGag-AGGUAUu----UGCCUCUGUg -5' |
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860 | 3' | -51.8 | NC_000898.1 | + | 3355 | 0.73 | 0.831134 |
Target: 5'- gUCgGACCUCgggUCC-UGGACGGAGGgGCg -3' miRNA: 3'- -GGgCUGGAG---AGGuAUUUGCCUCUgUG- -5' |
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860 | 3' | -51.8 | NC_000898.1 | + | 157406 | 0.7 | 0.928698 |
Target: 5'- uCCCGGCgugUCUCCGUuuAUGGAGAgGu -3' miRNA: 3'- -GGGCUGg--AGAGGUAuuUGCCUCUgUg -5' |
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860 | 3' | -51.8 | NC_000898.1 | + | 4239 | 0.7 | 0.928698 |
Target: 5'- uCCCGGCgugUCUCCGUuuAUGGAGAgGu -3' miRNA: 3'- -GGGCUGg--AGAGGUAuuUGCCUCUgUg -5' |
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860 | 3' | -51.8 | NC_000898.1 | + | 112342 | 0.69 | 0.959959 |
Target: 5'- aCCCGuCgUCUCCAaGAACaacaguuaGAGGCACg -3' miRNA: 3'- -GGGCuGgAGAGGUaUUUGc-------CUCUGUG- -5' |
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860 | 3' | -51.8 | NC_000898.1 | + | 153209 | 0.68 | 0.963484 |
Target: 5'- aCCGACCUC-CCA-AAGCaGAGAaGCa -3' miRNA: 3'- gGGCUGGAGaGGUaUUUGcCUCUgUG- -5' |
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860 | 3' | -51.8 | NC_000898.1 | + | 37821 | 0.68 | 0.963484 |
Target: 5'- aCCGAUUgucCUUCAgggggcGCGGGGACACa -3' miRNA: 3'- gGGCUGGa--GAGGUauu---UGCCUCUGUG- -5' |
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860 | 3' | -51.8 | NC_000898.1 | + | 37215 | 0.68 | 0.972746 |
Target: 5'- cUCUGuCCUCUCCGUGAGCacugucaGAGGuCGCg -3' miRNA: 3'- -GGGCuGGAGAGGUAUUUGc------CUCU-GUG- -5' |
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860 | 3' | -51.8 | NC_000898.1 | + | 10710 | 0.68 | 0.975417 |
Target: 5'- gCCCGGCCg--CUAUcgGCGGAcGACGu -3' miRNA: 3'- -GGGCUGGagaGGUAuuUGCCU-CUGUg -5' |
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860 | 3' | -51.8 | NC_000898.1 | + | 49735 | 0.67 | 0.980178 |
Target: 5'- ----uCUUgUCCGUAGACGGAGugGCu -3' miRNA: 3'- gggcuGGAgAGGUAUUUGCCUCugUG- -5' |
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860 | 3' | -51.8 | NC_000898.1 | + | 153085 | 0.67 | 0.984215 |
Target: 5'- gUCCGACCUC-CCA-AAACaGAGAaagcaGCg -3' miRNA: 3'- -GGGCUGGAGaGGUaUUUGcCUCUg----UG- -5' |
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860 | 3' | -51.8 | NC_000898.1 | + | 117018 | 0.66 | 0.987596 |
Target: 5'- -aCGcCCUCUCCGcUAuguCGGAGAUAa -3' miRNA: 3'- ggGCuGGAGAGGU-AUuu-GCCUCUGUg -5' |
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860 | 3' | -51.8 | NC_000898.1 | + | 62727 | 0.66 | 0.989061 |
Target: 5'- aUCGACgUCUCUcaauuGUAuuguGACGGAGGCuACg -3' miRNA: 3'- gGGCUGgAGAGG-----UAU----UUGCCUCUG-UG- -5' |
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860 | 3' | -51.8 | NC_000898.1 | + | 156522 | 0.73 | 0.831134 |
Target: 5'- gUCgGACCUCgggUCC-UGGACGGAGGgGCg -3' miRNA: 3'- -GGgCUGGAG---AGGuAUUUGCCUCUgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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