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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
860 | 5' | -60.2 | NC_000898.1 | + | 11675 | 0.66 | 0.773157 |
Target: 5'- aGGUCgUUCUuucgcCCuGAGGUGGCCCa -3' miRNA: 3'- gCCGGgAGGGcaa--GGuCUCCAUCGGG- -5' |
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860 | 5' | -60.2 | NC_000898.1 | + | 97962 | 0.67 | 0.717317 |
Target: 5'- aCGGCgugCUUCCacuucaGUUCCAGGGGUGuugacuGUCCu -3' miRNA: 3'- -GCCG---GGAGGg-----CAAGGUCUCCAU------CGGG- -5' |
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860 | 5' | -60.2 | NC_000898.1 | + | 9041 | 0.72 | 0.440903 |
Target: 5'- --aCCCUcgCCCGUUCCcgGGGGGggggGGCCCg -3' miRNA: 3'- gccGGGA--GGGCAAGG--UCUCCa---UCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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