miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
861 5' -60.2 NC_000898.1 + 2396 0.66 0.764351
Target:  5'- uGCuGGGGCUcuguuucgucauUCGCGugGCGgCGCgCg- -3'
miRNA:   3'- -CG-CCCUGA------------AGCGCugCGCgGUGgGaa -5'
861 5' -60.2 NC_000898.1 + 155563 0.66 0.764351
Target:  5'- uGCuGGGGCUcuguuucgucauUCGCGugGCGgCGCgCg- -3'
miRNA:   3'- -CG-CCCUGA------------AGCGCugCGCgGUGgGaa -5'
861 5' -60.2 NC_000898.1 + 5235 0.66 0.755113
Target:  5'- cGCGccGGA--UCGCGAUGCGuCCGuCCCUc -3'
miRNA:   3'- -CGC--CCUgaAGCGCUGCGC-GGU-GGGAa -5'
861 5' -60.2 NC_000898.1 + 158402 0.66 0.755113
Target:  5'- cGCGccGGA--UCGCGAUGCGuCCGuCCCUc -3'
miRNA:   3'- -CGC--CCUgaAGCGCUGCGC-GGU-GGGAa -5'
861 5' -60.2 NC_000898.1 + 10448 0.67 0.70756
Target:  5'- aCGGcGugUUCGaCGACGCGCUguACCg-- -3'
miRNA:   3'- cGCC-CugAAGC-GCUGCGCGG--UGGgaa -5'
861 5' -60.2 NC_000898.1 + 157630 0.67 0.678241
Target:  5'- cGgGGGACggggGUGugGCGCCgACUCUg -3'
miRNA:   3'- -CgCCCUGaag-CGCugCGCGG-UGGGAa -5'
861 5' -60.2 NC_000898.1 + 4462 0.67 0.678241
Target:  5'- cGgGGGACggggGUGugGCGCCgACUCUg -3'
miRNA:   3'- -CgCCCUGaag-CGCugCGCGG-UGGGAa -5'
861 5' -60.2 NC_000898.1 + 2186 0.68 0.648602
Target:  5'- cGCGGcGACgUCGCGGCcgucGCGCuCGCCg-- -3'
miRNA:   3'- -CGCC-CUGaAGCGCUG----CGCG-GUGGgaa -5'
861 5' -60.2 NC_000898.1 + 155353 0.68 0.648602
Target:  5'- cGCGGcGACgUCGCGGCcgucGCGCuCGCCg-- -3'
miRNA:   3'- -CGCC-CUGaAGCGCUG----CGCG-GUGGgaa -5'
861 5' -60.2 NC_000898.1 + 3808 0.73 0.364502
Target:  5'- cGgGGGACUUCccgcCGACGCGCCugCg-- -3'
miRNA:   3'- -CgCCCUGAAGc---GCUGCGCGGugGgaa -5'
861 5' -60.2 NC_000898.1 + 156976 0.73 0.364502
Target:  5'- cGgGGGACUUCccgcCGACGCGCCugCg-- -3'
miRNA:   3'- -CgCCCUGAAGc---GCUGCGCGGugGgaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.