miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8614 3' -68.6 NC_002229.2 + 146917 0.66 0.430601
Target:  5'- aCCGaaagcCGGC-CCCCCguacucggGGGGCuGCaacuUCCCg -3'
miRNA:   3'- -GGC-----GCCGcGGGGGa-------CCCCGcCG----AGGG- -5'
8614 3' -68.6 NC_002229.2 + 165489 0.66 0.414657
Target:  5'- uUGCaGC-CCCCCgaguacggGGGGCcGGCUUUCg -3'
miRNA:   3'- gGCGcCGcGGGGGa-------CCCCG-CCGAGGG- -5'
8614 3' -68.6 NC_002229.2 + 126077 0.66 0.406823
Target:  5'- gCGCGGCccuccGCCccuuuuccaCCCUGGGGagcgggGGCgaCCCa -3'
miRNA:   3'- gGCGCCG-----CGG---------GGGACCCCg-----CCGa-GGG- -5'
8614 3' -68.6 NC_002229.2 + 802 0.68 0.320402
Target:  5'- -gGUGGUGCCCgCUGGGcGCcGCUCg- -3'
miRNA:   3'- ggCGCCGCGGGgGACCC-CGcCGAGgg -5'
8614 3' -68.6 NC_002229.2 + 644 0.69 0.282039
Target:  5'- ----cGCGCCCCCcugcgccgUGGGGCGcgcggacggcgucGCUCCCa -3'
miRNA:   3'- ggcgcCGCGGGGG--------ACCCCGC-------------CGAGGG- -5'
8614 3' -68.6 NC_002229.2 + 621 0.75 0.111752
Target:  5'- -aGCGGCGCCCCC-GGGGCaaCcCCCg -3'
miRNA:   3'- ggCGCCGCGGGGGaCCCCGccGaGGG- -5'
8614 3' -68.6 NC_002229.2 + 137890 0.76 0.094603
Target:  5'- gCGCGGggguUGCCCCg-GGGGCGccGCUCCCg -3'
miRNA:   3'- gGCGCC----GCGGGGgaCCCCGC--CGAGGG- -5'
8614 3' -68.6 NC_002229.2 + 138153 1.1 0.000263
Target:  5'- cCCGCGGCGCCCCCUGGGGCGGCUCCCc -3'
miRNA:   3'- -GGCGCCGCGGGGGACCCCGCCGAGGG- -5'
8614 3' -68.6 NC_002229.2 + 558 1.1 0.000263
Target:  5'- cCCGCGGCGCCCCCUGGGGCGGCUCCCc -3'
miRNA:   3'- -GGCGCCGCGGGGGACCCCGCCGAGGG- -5'
8614 3' -68.6 NC_002229.2 + 821 0.76 0.094603
Target:  5'- gCGCGGggguUGCCCCg-GGGGCGccGCUCCCg -3'
miRNA:   3'- gGCGCC----GCGGGGgaCCCCGC--CGAGGG- -5'
8614 3' -68.6 NC_002229.2 + 138091 0.75 0.111752
Target:  5'- -aGCGGCGCCCCC-GGGGCaaCcCCCg -3'
miRNA:   3'- ggCGCCGCGGGGGaCCCCGccGaGGG- -5'
8614 3' -68.6 NC_002229.2 + 138068 0.69 0.282039
Target:  5'- ----cGCGCCCCCcugcgccgUGGGGCGcgcggacggcgucGCUCCCa -3'
miRNA:   3'- ggcgcCGCGGGGG--------ACCCCGC-------------CGAGGG- -5'
8614 3' -68.6 NC_002229.2 + 137910 0.68 0.320402
Target:  5'- -gGUGGUGCCCgCUGGGcGCcGCUCg- -3'
miRNA:   3'- ggCGCCGCGGGgGACCC-CGcCGAGgg -5'
8614 3' -68.6 NC_002229.2 + 12635 0.66 0.406823
Target:  5'- gCGCGGCccuccGCCccuuuuccaCCCUGGGGagcgggGGCgaCCCa -3'
miRNA:   3'- gGCGCCG-----CGG---------GGGACCCCg-----CCGa-GGG- -5'
8614 3' -68.6 NC_002229.2 + 147126 0.66 0.414657
Target:  5'- uUGCaGC-CCCCCgaguacggGGGGCcGGCUUUCg -3'
miRNA:   3'- gGCGcCGcGGGGGa-------CCCCG-CCGAGGG- -5'
8614 3' -68.6 NC_002229.2 + 165697 0.66 0.430601
Target:  5'- aCCGaaagcCGGC-CCCCCguacucggGGGGCuGCaacuUCCCg -3'
miRNA:   3'- -GGC-----GCCGcGGGGGa-------CCCCGcCG----AGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.