miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8617 3' -49.8 NC_002229.2 + 886 0.66 0.997885
Target:  5'- cGGUcGUGCGcgcggGGcCGCGCGUGUGggaGCGa -3'
miRNA:   3'- -UCAaUACGUa----CU-GCGCGUACGCa--UGC- -5'
8617 3' -49.8 NC_002229.2 + 137825 0.66 0.997885
Target:  5'- cGGUcGUGCGcgcggGGcCGCGCGUGUGggaGCGa -3'
miRNA:   3'- -UCAaUACGUa----CU-GCGCGUACGCa--UGC- -5'
8617 3' -49.8 NC_002229.2 + 136023 0.68 0.988676
Target:  5'- cGUcAUGCAUaACugGCGCAUGCGUgaACGc -3'
miRNA:   3'- uCAaUACGUAcUG--CGCGUACGCA--UGC- -5'
8617 3' -49.8 NC_002229.2 + 2689 0.68 0.988676
Target:  5'- cGUcAUGCAUaACugGCGCAUGCGUgaACGc -3'
miRNA:   3'- uCAaUACGUAcUG--CGCGUACGCA--UGC- -5'
8617 3' -49.8 NC_002229.2 + 39282 0.68 0.987133
Target:  5'- -----cGCAUGugGCGUGUG-GUACa -3'
miRNA:   3'- ucaauaCGUACugCGCGUACgCAUGc -5'
8617 3' -49.8 NC_002229.2 + 136091 0.69 0.986133
Target:  5'- uGGUUAUcugcGCAUGccugguuuucgacacACGCGCAUGCGcagaUACa -3'
miRNA:   3'- -UCAAUA----CGUAC---------------UGCGCGUACGC----AUGc -5'
8617 3' -49.8 NC_002229.2 + 2621 0.69 0.986133
Target:  5'- uGGUUAUcugcGCAUGccugguuuucgacacACGCGCAUGCGcagaUACa -3'
miRNA:   3'- -UCAAUA----CGUAC---------------UGCGCGUACGC----AUGc -5'
8617 3' -49.8 NC_002229.2 + 2750 0.71 0.953895
Target:  5'- cGUUuUGUGUGuagaGgGCGCAUGCGUACu -3'
miRNA:   3'- uCAAuACGUAC----UgCGCGUACGCAUGc -5'
8617 3' -49.8 NC_002229.2 + 135961 0.71 0.953895
Target:  5'- cGUUuUGUGUGuagaGgGCGCAUGCGUACu -3'
miRNA:   3'- uCAAuACGUAC----UgCGCGUACGCAUGc -5'
8617 3' -49.8 NC_002229.2 + 2678 0.78 0.683737
Target:  5'- -uUUGUGUGUGGaggGCGCAUGCGUACu -3'
miRNA:   3'- ucAAUACGUACUg--CGCGUACGCAUGc -5'
8617 3' -49.8 NC_002229.2 + 136033 0.78 0.683737
Target:  5'- -uUUGUGUGUGGaggGCGCAUGCGUACu -3'
miRNA:   3'- ucAAUACGUACUg--CGCGUACGCAUGc -5'
8617 3' -49.8 NC_002229.2 + 2876 1.11 0.009705
Target:  5'- cAGUUAUGCAUGACGCGCAUGCGUACGg -3'
miRNA:   3'- -UCAAUACGUACUGCGCGUACGCAUGC- -5'
8617 3' -49.8 NC_002229.2 + 135835 1.11 0.009705
Target:  5'- cAGUUAUGCAUGACGCGCAUGCGUACGg -3'
miRNA:   3'- -UCAAUACGUACUGCGCGUACGCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.