miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8617 5' -52.3 NC_002229.2 + 103193 0.66 0.980207
Target:  5'- -uUGCAUGCGCGUG-GcUGGAAACa- -3'
miRNA:   3'- acGCGUACGCGCACaCaGCUUUUGgu -5'
8617 5' -52.3 NC_002229.2 + 2957 0.69 0.928192
Target:  5'- gUGCGCAUGCGCGaugaGUG-CGcAGGGCg- -3'
miRNA:   3'- -ACGCGUACGCGCa---CACaGC-UUUUGgu -5'
8617 5' -52.3 NC_002229.2 + 135754 0.69 0.928192
Target:  5'- gUGCGCAUGCGCGaugaGUG-CGcAGGGCg- -3'
miRNA:   3'- -ACGCGUACGCGCa---CACaGC-UUUUGgu -5'
8617 5' -52.3 NC_002229.2 + 878 0.73 0.774843
Target:  5'- cGCGCGgggccGCGCGUGUGggagCGAc-GCCGu -3'
miRNA:   3'- aCGCGUa----CGCGCACACa---GCUuuUGGU- -5'
8617 5' -52.3 NC_002229.2 + 137833 0.73 0.774843
Target:  5'- cGCGCGgggccGCGCGUGUGggagCGAc-GCCGu -3'
miRNA:   3'- aCGCGUa----CGCGCACACa---GCUuuUGGU- -5'
8617 5' -52.3 NC_002229.2 + 2759 0.76 0.590754
Target:  5'- cUGCGCAUGCGUuuuGUGUGUaGAGGGCgCAu -3'
miRNA:   3'- -ACGCGUACGCG---CACACAgCUUUUG-GU- -5'
8617 5' -52.3 NC_002229.2 + 135952 0.76 0.590754
Target:  5'- cUGCGCAUGCGUuuuGUGUGUaGAGGGCgCAu -3'
miRNA:   3'- -ACGCGUACGCG---CACACAgCUUUUG-GU- -5'
8617 5' -52.3 NC_002229.2 + 2690 0.8 0.388343
Target:  5'- cUGCGCAUGCGUuuuGUGUGUgGAGGGCgCAu -3'
miRNA:   3'- -ACGCGUACGCG---CACACAgCUUUUG-GU- -5'
8617 5' -52.3 NC_002229.2 + 136021 0.8 0.388343
Target:  5'- cUGCGCAUGCGUuuuGUGUGUgGAGGGCgCAu -3'
miRNA:   3'- -ACGCGUACGCG---CACACAgCUUUUG-GU- -5'
8617 5' -52.3 NC_002229.2 + 2838 1.09 0.006675
Target:  5'- cUGCGCAUGCGCGUGUGUCGAAAACCAg -3'
miRNA:   3'- -ACGCGUACGCGCACACAGCUUUUGGU- -5'
8617 5' -52.3 NC_002229.2 + 135873 1.09 0.006675
Target:  5'- cUGCGCAUGCGCGUGUGUCGAAAACCAg -3'
miRNA:   3'- -ACGCGUACGCGCACACAGCUUUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.