miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8618 3' -58 NC_002229.2 + 3783 1.08 0.001999
Target:  5'- cUGUGGCCAGCUCACUGGCUGUGCACUg -3'
miRNA:   3'- -ACACCGGUCGAGUGACCGACACGUGA- -5'
8618 3' -58 NC_002229.2 + 134928 1.08 0.001999
Target:  5'- cUGUGGCCAGCUCACUGGCUGUGCACUg -3'
miRNA:   3'- -ACACCGGUCGAGUGACCGACACGUGA- -5'
8618 3' -58 NC_002229.2 + 112883 0.68 0.675905
Target:  5'- cGUGGCCAa-UCAUUGGCUagaacguacaGUGCAUg -3'
miRNA:   3'- aCACCGGUcgAGUGACCGA----------CACGUGa -5'
8618 3' -58 NC_002229.2 + 137707 0.67 0.774065
Target:  5'- cGUGGCCcuggGGCUUg--GGCUGaGCGCa -3'
miRNA:   3'- aCACCGG----UCGAGugaCCGACaCGUGa -5'
8618 3' -58 NC_002229.2 + 59564 0.67 0.764667
Target:  5'- cGacGCCGGCaUCACUGGUgcgGUGUAUa -3'
miRNA:   3'- aCacCGGUCG-AGUGACCGa--CACGUGa -5'
8618 3' -58 NC_002229.2 + 1004 0.67 0.774065
Target:  5'- cGUGGCCcuggGGCUUg--GGCUGaGCGCa -3'
miRNA:   3'- aCACCGG----UCGAGugaCCGACaCGUGa -5'
8618 3' -58 NC_002229.2 + 173700 0.66 0.810303
Target:  5'- gUGUGGCCgcgagaGGgUUAgaGGCcGUGCGCa -3'
miRNA:   3'- -ACACCGG------UCgAGUgaCCGaCACGUGa -5'
8618 3' -58 NC_002229.2 + 138914 0.66 0.810303
Target:  5'- gUGUGGCCgcgagaGGgUUAgaGGCcGUGCGCa -3'
miRNA:   3'- -ACACCGG------UCgAGUgaCCGaCACGUGa -5'
8618 3' -58 NC_002229.2 + 47593 0.66 0.810303
Target:  5'- aUGUGGCCcuucGCgcgcaaUCAUUGGCUGUuGUAUUu -3'
miRNA:   3'- -ACACCGGu---CG------AGUGACCGACA-CGUGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.