miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8619 3' -47.1 NC_002229.2 + 6202 0.66 0.9999
Target:  5'- gGAUCAGaaCCCUCCGUAUuAUGcAAAc -3'
miRNA:   3'- -CUAGUUccGGGAGGCAUAuUACaUUU- -5'
8619 3' -47.1 NC_002229.2 + 166349 0.66 0.9999
Target:  5'- -cUCAGGGCCUgCCGUGUuuuccggcAUGUGc- -3'
miRNA:   3'- cuAGUUCCGGGaGGCAUAu-------UACAUuu -5'
8619 3' -47.1 NC_002229.2 + 25448 0.66 0.999829
Target:  5'- aGUCAAGauauauaCCUgCGUAUGAUGUAGAc -3'
miRNA:   3'- cUAGUUCcg-----GGAgGCAUAUUACAUUU- -5'
8619 3' -47.1 NC_002229.2 + 132223 0.67 0.999287
Target:  5'- uGAUCAAGGCCUggCgGUAUAAUu---- -3'
miRNA:   3'- -CUAGUUCCGGGa-GgCAUAUUAcauuu -5'
8619 3' -47.1 NC_002229.2 + 91459 0.75 0.915085
Target:  5'- --cCAAGGUCCUCCGUAUAuguucccgcAUGUGc- -3'
miRNA:   3'- cuaGUUCCGGGAGGCAUAU---------UACAUuu -5'
8619 3' -47.1 NC_002229.2 + 132272 1.07 0.025704
Target:  5'- cGAUCAAGGCCCUCCGUAUAAUGUAAAu -3'
miRNA:   3'- -CUAGUUCCGGGAGGCAUAUUACAUUU- -5'
8619 3' -47.1 NC_002229.2 + 6439 1.06 0.031602
Target:  5'- cGAUCAAGGCCCUCCGUAUAAUGUAAu -3'
miRNA:   3'- -CUAGUUCCGGGAGGCAUAUUACAUUu -5'
8619 3' -47.1 NC_002229.2 + 6488 0.67 0.999287
Target:  5'- uGAUCAAGGCCUggCgGUAUAAUu---- -3'
miRNA:   3'- -CUAGUUCCGGGa-GgCAUAUUAcauuu -5'
8619 3' -47.1 NC_002229.2 + 146265 0.66 0.9999
Target:  5'- -cUCAGGGCCUgCCGUGUuuuccggcAUGUGc- -3'
miRNA:   3'- cuAGUUCCGGGaGGCAUAu-------UACAUuu -5'
8619 3' -47.1 NC_002229.2 + 132509 0.66 0.9999
Target:  5'- gGAUCAGaaCCCUCCGUAUuAUGcAAAc -3'
miRNA:   3'- -CUAGUUccGGGAGGCAUAuUACaUUU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.