Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
862 | 5' | -61.2 | NC_000898.1 | + | 4502 | 0.67 | 0.632137 |
Target: 5'- uCGuuGCCGCGGCagGGuCGGCGCc--- -3' miRNA: 3'- cGCggCGGCGCUGg-CC-GCUGCGauac -5' |
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862 | 5' | -61.2 | NC_000898.1 | + | 157670 | 0.67 | 0.632137 |
Target: 5'- uCGuuGCCGCGGCagGGuCGGCGCc--- -3' miRNA: 3'- cGCggCGGCGCUGg-CC-GCUGCGauac -5' |
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862 | 5' | -61.2 | NC_000898.1 | + | 9258 | 0.68 | 0.602873 |
Target: 5'- aGCGCa-CCGCGGCCgcGGUGGCGUa--- -3' miRNA: 3'- -CGCGgcGGCGCUGG--CCGCUGCGauac -5' |
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862 | 5' | -61.2 | NC_000898.1 | + | 3117 | 0.69 | 0.526128 |
Target: 5'- aGgGCgGCCGCGACCuGCcGAUGCa--- -3' miRNA: 3'- -CgCGgCGGCGCUGGcCG-CUGCGauac -5' |
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862 | 5' | -61.2 | NC_000898.1 | + | 156284 | 0.69 | 0.526128 |
Target: 5'- aGgGCgGCCGCGACCuGCcGAUGCa--- -3' miRNA: 3'- -CgCGgCGGCGCUGGcCG-CUGCGauac -5' |
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862 | 5' | -61.2 | NC_000898.1 | + | 5517 | 0.72 | 0.370697 |
Target: 5'- aGCGUCGCCG-GuCgCGGCGGCGCUc-- -3' miRNA: 3'- -CGCGGCGGCgCuG-GCCGCUGCGAuac -5' |
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862 | 5' | -61.2 | NC_000898.1 | + | 158685 | 0.72 | 0.370697 |
Target: 5'- aGCGUCGCCG-GuCgCGGCGGCGCUc-- -3' miRNA: 3'- -CGCGGCGGCgCuG-GCCGCUGCGAuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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