miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8621 3' -44.7 NC_002229.2 + 19330 0.66 0.999998
Target:  5'- gGUUgCGauUAUUGCGAACCGGUGaAUGUGg -3'
miRNA:   3'- gCAA-GC--GUGACGCUUGGUUAU-UAUAU- -5'
8621 3' -44.7 NC_002229.2 + 126826 0.68 0.999967
Target:  5'- gGUUCGCAgUGCGAACg--------- -3'
miRNA:   3'- gCAAGCGUgACGCUUGguuauuauau -5'
8621 3' -44.7 NC_002229.2 + 11887 0.68 0.999967
Target:  5'- gGUUCGCAgUGCGAACg--------- -3'
miRNA:   3'- gCAAGCGUgACGCUUGguuauuauau -5'
8621 3' -44.7 NC_002229.2 + 112515 0.68 0.999976
Target:  5'- cCGUUCGCcCUGU--GCCGAUAgacAUAUAc -3'
miRNA:   3'- -GCAAGCGuGACGcuUGGUUAU---UAUAU- -5'
8621 3' -44.7 NC_002229.2 + 126873 0.76 0.972542
Target:  5'- gCGUUCGCACca-GAGuCCAAUAAUAUAa -3'
miRNA:   3'- -GCAAGCGUGacgCUU-GGUUAUUAUAU- -5'
8621 3' -44.7 NC_002229.2 + 11840 0.76 0.972542
Target:  5'- gCGUUCGCACca-GAGuCCAAUAAUAUAa -3'
miRNA:   3'- -GCAAGCGUGacgCUU-GGUUAUUAUAU- -5'
8621 3' -44.7 NC_002229.2 + 12077 1.08 0.043111
Target:  5'- gCGUUCGCACUGCGAACCAAUAAUAUAu -3'
miRNA:   3'- -GCAAGCGUGACGCUUGGUUAUUAUAU- -5'
8621 3' -44.7 NC_002229.2 + 126636 1.08 0.043111
Target:  5'- gCGUUCGCACUGCGAACCAAUAAUAUAu -3'
miRNA:   3'- -GCAAGCGUGACGCUUGGUUAUUAUAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.