miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8622 5' -55.9 NC_002229.2 + 46421 1.11 0.002721
Target:  5'- aUCUCCCGGGACCACAUAACGUCCCACa -3'
miRNA:   3'- -AGAGGGCCCUGGUGUAUUGCAGGGUG- -5'
8622 5' -55.9 NC_002229.2 + 46253 0.71 0.713687
Target:  5'- aUCUCCCGGGACCACAaaaaaaucaAAUGcugggugcaaUUCCAUa -3'
miRNA:   3'- -AGAGGGCCCUGGUGUa--------UUGC----------AGGGUG- -5'
8622 5' -55.9 NC_002229.2 + 46218 0.69 0.807237
Target:  5'- aCUUgUGGGACguUAUGugGUCCCGg -3'
miRNA:   3'- aGAGgGCCCUGguGUAUugCAGGGUg -5'
8622 5' -55.9 NC_002229.2 + 121190 0.69 0.824361
Target:  5'- cCUCCUGGuaaauCCAUAUuGCGUCCgCGCa -3'
miRNA:   3'- aGAGGGCCcu---GGUGUAuUGCAGG-GUG- -5'
8622 5' -55.9 NC_002229.2 + 28151 0.68 0.864061
Target:  5'- gUCUCCCGaaaACCAUccguuccccaugAUAgacACGUCCCACa -3'
miRNA:   3'- -AGAGGGCcc-UGGUG------------UAU---UGCAGGGUG- -5'
8622 5' -55.9 NC_002229.2 + 118314 0.68 0.856504
Target:  5'- aCUCCCauguuaucuGaGGACCACAUAAgGUacucUCCGCg -3'
miRNA:   3'- aGAGGG---------C-CCUGGUGUAUUgCA----GGGUG- -5'
8622 5' -55.9 NC_002229.2 + 148385 0.68 0.848749
Target:  5'- aCUCCgGgGGACCcuuauCAaGGCGUCUCGCu -3'
miRNA:   3'- aGAGGgC-CCUGGu----GUaUUGCAGGGUG- -5'
8622 5' -55.9 NC_002229.2 + 164229 0.68 0.848749
Target:  5'- aCUCCgGgGGACCcuuauCAaGGCGUCUCGCu -3'
miRNA:   3'- aGAGGgC-CCUGGu----GUaUUGCAGGGUG- -5'
8622 5' -55.9 NC_002229.2 + 44293 0.67 0.892197
Target:  5'- cCUCCCucuuGGAUUGCAUggUGUCCUAa -3'
miRNA:   3'- aGAGGGc---CCUGGUGUAuuGCAGGGUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.