miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8624 3' -45 NC_002229.2 + 107754 1.11 0.032386
Target:  5'- uCAUUAAAAUCGAGAGCGAGGUCUAGAa -3'
miRNA:   3'- -GUAAUUUUAGCUCUCGCUCCAGAUCU- -5'
8624 3' -45 NC_002229.2 + 78322 0.79 0.905389
Target:  5'- -cUUGGAAUCGGGAGCcggcgGAGGUUUGGGc -3'
miRNA:   3'- guAAUUUUAGCUCUCG-----CUCCAGAUCU- -5'
8624 3' -45 NC_002229.2 + 78274 0.77 0.954282
Target:  5'- -cUUGGAAUCGGGAGUcggcgGAGGUUUGGGc -3'
miRNA:   3'- guAAUUUUAGCUCUCG-----CUCCAGAUCU- -5'
8624 3' -45 NC_002229.2 + 78490 0.73 0.994918
Target:  5'- -cUUGAAAUCGGGAuccgGCGgAGGUUUGGGc -3'
miRNA:   3'- guAAUUUUAGCUCU----CGC-UCCAGAUCU- -5'
8624 3' -45 NC_002229.2 + 78424 0.73 0.994918
Target:  5'- -cUUGAAAUCGGGAuccgGCGgAGGUUUGGGc -3'
miRNA:   3'- guAAUUUUAGCUCU----CGC-UCCAGAUCU- -5'
8624 3' -45 NC_002229.2 + 78706 0.73 0.994918
Target:  5'- -cUUGAAAUCGGGAuccgGCGgAGGUUUGGGc -3'
miRNA:   3'- guAAUUUUAGCUCU----CGC-UCCAGAUCU- -5'
8624 3' -45 NC_002229.2 + 78538 0.73 0.994918
Target:  5'- -cUUGAAAUCGGGAuccgGCGgAGGUUUGGGc -3'
miRNA:   3'- guAAUUUUAGCUCU----CGC-UCCAGAUCU- -5'
8624 3' -45 NC_002229.2 + 78604 0.73 0.994918
Target:  5'- -cUUGAAAUCGGGAuccgGCGgAGGUUUGGGc -3'
miRNA:   3'- guAAUUUUAGCUCU----CGC-UCCAGAUCU- -5'
8624 3' -45 NC_002229.2 + 9291 0.66 0.999998
Target:  5'- --gUAGAAaCGAGAGCuguGAGGuUCUGGc -3'
miRNA:   3'- guaAUUUUaGCUCUCG---CUCC-AGAUCu -5'
8624 3' -45 NC_002229.2 + 129421 0.66 0.999998
Target:  5'- --gUAGAAaCGAGAGCuguGAGGuUCUGGc -3'
miRNA:   3'- guaAUUUUaGCUCUCG---CUCC-AGAUCu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.