miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8624 5' -49 NC_002229.2 + 865 0.66 0.999448
Target:  5'- gCGUgUGGgaGCGACGCCGUCcgcgcGCCc -3'
miRNA:   3'- -GUAgAUC--UGCUGCGGUAGcauuaCGG- -5'
8624 5' -49 NC_002229.2 + 137846 0.66 0.999448
Target:  5'- gCGUgUGGgaGCGACGCCGUCcgcgcGCCc -3'
miRNA:   3'- -GUAgAUC--UGCUGCGGUAGcauuaCGG- -5'
8624 5' -49 NC_002229.2 + 65530 0.67 0.998187
Target:  5'- --gCUGGGCGGCagggGCCA-CGUcuUGCCc -3'
miRNA:   3'- guaGAUCUGCUG----CGGUaGCAuuACGG- -5'
8624 5' -49 NC_002229.2 + 21891 0.67 0.997831
Target:  5'- gGUUUcGGCGugGCCGaacUCGUAAUuGCa -3'
miRNA:   3'- gUAGAuCUGCugCGGU---AGCAUUA-CGg -5'
8624 5' -49 NC_002229.2 + 22734 0.68 0.996943
Target:  5'- aGUUUGGAgaauuuUGaACGCUAUCGUAcgGCUg -3'
miRNA:   3'- gUAGAUCU------GC-UGCGGUAGCAUuaCGG- -5'
8624 5' -49 NC_002229.2 + 65791 0.68 0.995773
Target:  5'- -cUCcAGGCGACccagggauccaGCUAUCGUuuUGCCu -3'
miRNA:   3'- guAGaUCUGCUG-----------CGGUAGCAuuACGG- -5'
8624 5' -49 NC_002229.2 + 126686 0.69 0.993356
Target:  5'- -cUCUGGuGCGaACGCCGagGUGA-GCCa -3'
miRNA:   3'- guAGAUC-UGC-UGCGGUagCAUUaCGG- -5'
8624 5' -49 NC_002229.2 + 81936 0.69 0.993356
Target:  5'- --aCUGGucuCGAUGCCAUCGcauAUaGCCa -3'
miRNA:   3'- guaGAUCu--GCUGCGGUAGCau-UA-CGG- -5'
8624 5' -49 NC_002229.2 + 12027 0.69 0.993356
Target:  5'- -cUCUGGuGCGaACGCCGagGUGA-GCCa -3'
miRNA:   3'- guAGAUC-UGC-UGCGGUagCAUUaCGG- -5'
8624 5' -49 NC_002229.2 + 155622 0.69 0.99234
Target:  5'- -uUCUAGAUGaAUGCgAUCGau-UGCCa -3'
miRNA:   3'- guAGAUCUGC-UGCGgUAGCauuACGG- -5'
8624 5' -49 NC_002229.2 + 2743 0.69 0.98994
Target:  5'- uGUgUAGAgGGCGCaugCGUAcUGCCg -3'
miRNA:   3'- gUAgAUCUgCUGCGguaGCAUuACGG- -5'
8624 5' -49 NC_002229.2 + 135968 0.69 0.98994
Target:  5'- uGUgUAGAgGGCGCaugCGUAcUGCCg -3'
miRNA:   3'- gUAgAUCUgCUGCGguaGCAUuACGG- -5'
8624 5' -49 NC_002229.2 + 41269 0.72 0.953337
Target:  5'- cCAUaCUGGACGuCGCUguuauccGUCGUGuUGCCu -3'
miRNA:   3'- -GUA-GAUCUGCuGCGG-------UAGCAUuACGG- -5'
8624 5' -49 NC_002229.2 + 67149 0.73 0.924686
Target:  5'- cUAUUUGGaACGAUGUgAUgGUGGUGCCa -3'
miRNA:   3'- -GUAGAUC-UGCUGCGgUAgCAUUACGG- -5'
8624 5' -49 NC_002229.2 + 12446 0.73 0.924124
Target:  5'- gGUCaugAGugGAgggagggUGCCAUCuGUGAUGCCg -3'
miRNA:   3'- gUAGa--UCugCU-------GCGGUAG-CAUUACGG- -5'
8624 5' -49 NC_002229.2 + 126266 0.73 0.924124
Target:  5'- gGUCaugAGugGAgggagggUGCCAUCuGUGAUGCCg -3'
miRNA:   3'- gUAGa--UCugCU-------GCGGUAG-CAUUACGG- -5'
8624 5' -49 NC_002229.2 + 107718 1.14 0.008868
Target:  5'- uCAUCUAGACGACGCCAUCGUAAUGCCa -3'
miRNA:   3'- -GUAGAUCUGCUGCGGUAGCAUUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.