miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8625 3' -45.8 NC_002229.2 + 11840 1.09 0.032123
Target:  5'- gCGUUCGCACCAGAGUCCAAUAAUAUAa -3'
miRNA:   3'- -GCAAGCGUGGUCUCAGGUUAUUAUAU- -5'
8625 3' -45.8 NC_002229.2 + 126636 0.71 0.996238
Target:  5'- gCGUUCGCACUGcGAa-CCAAUAAUAUAu -3'
miRNA:   3'- -GCAAGCGUGGU-CUcaGGUUAUUAUAU- -5'
8625 3' -45.8 NC_002229.2 + 48400 0.68 0.99984
Target:  5'- ---gUGCACC-GAGUCUGAUAGUGUu -3'
miRNA:   3'- gcaaGCGUGGuCUCAGGUUAUUAUAu -5'
8625 3' -45.8 NC_002229.2 + 12077 0.71 0.996238
Target:  5'- gCGUUCGCACUGcGAa-CCAAUAAUAUAu -3'
miRNA:   3'- -GCAAGCGUGGU-CUcaGGUUAUUAUAU- -5'
8625 3' -45.8 NC_002229.2 + 126873 1.09 0.032123
Target:  5'- gCGUUCGCACCAGAGUCCAAUAAUAUAa -3'
miRNA:   3'- -GCAAGCGUGGUCUCAGGUUAUUAUAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.