miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8626 3' -44.9 NC_002229.2 + 173706 0.67 0.999979
Target:  5'- uACAGUGugUGGCCGCGAgaggguuagaggccgUGCGCAg -3'
miRNA:   3'- -UGUCAUcuGCUGGUGCU---------------AUGUGU- -5'
8626 3' -44.9 NC_002229.2 + 166523 0.68 0.99992
Target:  5'- -gGGUGGACGGCCGaGAUggaaGCACc -3'
miRNA:   3'- ugUCAUCUGCUGGUgCUA----UGUGu -5'
8626 3' -44.9 NC_002229.2 + 165723 0.66 0.999994
Target:  5'- aACGGaAGuuGACagGCGAUACACAu -3'
miRNA:   3'- -UGUCaUCugCUGg-UGCUAUGUGU- -5'
8626 3' -44.9 NC_002229.2 + 164658 0.71 0.997452
Target:  5'- uCGGUGGugGGgcCCGCGGUAuCGCAg -3'
miRNA:   3'- uGUCAUCugCU--GGUGCUAU-GUGU- -5'
8626 3' -44.9 NC_002229.2 + 151481 0.82 0.749036
Target:  5'- gGCAGUAGACGACCACGGa----- -3'
miRNA:   3'- -UGUCAUCUGCUGGUGCUaugugu -5'
8626 3' -44.9 NC_002229.2 + 147956 0.71 0.997452
Target:  5'- uCGGUGGugGGgcCCGCGGUAuCGCAg -3'
miRNA:   3'- uGUCAUCugCU--GGUGCUAU-GUGU- -5'
8626 3' -44.9 NC_002229.2 + 146891 0.66 0.999994
Target:  5'- aACGGaAGuuGACagGCGAUACACAu -3'
miRNA:   3'- -UGUCaUCugCUGg-UGCUAUGUGU- -5'
8626 3' -44.9 NC_002229.2 + 146092 0.68 0.99992
Target:  5'- -gGGUGGACGGCCGaGAUggaaGCACc -3'
miRNA:   3'- ugUCAUCUGCUGGUgCUA----UGUGu -5'
8626 3' -44.9 NC_002229.2 + 138908 0.67 0.999979
Target:  5'- uACAGUGugUGGCCGCGAgaggguuagaggccgUGCGCAg -3'
miRNA:   3'- -UGUCAUcuGCUGGUGCU---------------AUGUGU- -5'
8626 3' -44.9 NC_002229.2 + 132226 1.06 0.048611
Target:  5'- aACAGUAGACGACCACGAUACACAc -3'
miRNA:   3'- -UGUCAUCUGCUGGUGCUAUGUGU- -5'
8626 3' -44.9 NC_002229.2 + 97008 0.66 0.999992
Target:  5'- -aGGUucuGGGCGACUAC-AUGCACGa -3'
miRNA:   3'- ugUCA---UCUGCUGGUGcUAUGUGU- -5'
8626 3' -44.9 NC_002229.2 + 76670 0.66 0.999994
Target:  5'- -aGGUAGGCGauGCCuguugggAUGAUGCACGa -3'
miRNA:   3'- ugUCAUCUGC--UGG-------UGCUAUGUGU- -5'
8626 3' -44.9 NC_002229.2 + 60485 0.69 0.999764
Target:  5'- gAUGGUAGACG-CUGcCGAUAUACAg -3'
miRNA:   3'- -UGUCAUCUGCuGGU-GCUAUGUGU- -5'
8626 3' -44.9 NC_002229.2 + 58767 0.66 0.999994
Target:  5'- cCAGUGGAUgaggagcacagaGGCgACGAUAUGCAu -3'
miRNA:   3'- uGUCAUCUG------------CUGgUGCUAUGUGU- -5'
8626 3' -44.9 NC_002229.2 + 32023 0.68 0.999894
Target:  5'- cCAGUAcGGCGAUCcCGAaGCACAc -3'
miRNA:   3'- uGUCAU-CUGCUGGuGCUaUGUGU- -5'
8626 3' -44.9 NC_002229.2 + 22975 0.69 0.999764
Target:  5'- --uGUAGGCGACC-CGAcACAUAu -3'
miRNA:   3'- uguCAUCUGCUGGuGCUaUGUGU- -5'
8626 3' -44.9 NC_002229.2 + 13037 0.68 0.999894
Target:  5'- uCAGUAGACucCUAUGAUACAgAa -3'
miRNA:   3'- uGUCAUCUGcuGGUGCUAUGUgU- -5'
8626 3' -44.9 NC_002229.2 + 6485 1.06 0.048611
Target:  5'- aACAGUAGACGACCACGAUACACAc -3'
miRNA:   3'- -UGUCAUCUGCUGGUGCUAUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.