miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8627 3' -47 NC_002229.2 + 166349 0.68 0.99834
Target:  5'- -cUCAGGGCCUgCCGUGUuuuccggcaUGUGCAc- -3'
miRNA:   3'- cuAGUCUUGGGaGGCAUA---------AUACGUuu -5'
8627 3' -47 NC_002229.2 + 146265 0.68 0.99834
Target:  5'- -cUCAGGGCCUgCCGUGUuuuccggcaUGUGCAc- -3'
miRNA:   3'- cuAGUCUUGGGaGGCAUA---------AUACGUuu -5'
8627 3' -47 NC_002229.2 + 132762 0.68 0.998882
Target:  5'- uAUCGGAACCCUUCGUucgGUGa--- -3'
miRNA:   3'- cUAGUCUUGGGAGGCAuaaUACguuu -5'
8627 3' -47 NC_002229.2 + 132509 1.06 0.029548
Target:  5'- gGAUCAGAACCCUCCGUAUUAUGCAAAc -3'
miRNA:   3'- -CUAGUCUUGGGAGGCAUAAUACGUUU- -5'
8627 3' -47 NC_002229.2 + 132272 0.81 0.642696
Target:  5'- cGAUCAaGGCCCUCCGUAUaAUGUAAAu -3'
miRNA:   3'- -CUAGUcUUGGGAGGCAUAaUACGUUU- -5'
8627 3' -47 NC_002229.2 + 118822 0.68 0.999091
Target:  5'- gGAUCAGAACaUCUCC-UcgUAUGCGc- -3'
miRNA:   3'- -CUAGUCUUG-GGAGGcAuaAUACGUuu -5'
8627 3' -47 NC_002229.2 + 6439 0.8 0.718979
Target:  5'- cGAUCAaGGCCCUCCGUAUaAUGUAAu -3'
miRNA:   3'- -CUAGUcUUGGGAGGCAUAaUACGUUu -5'
8627 3' -47 NC_002229.2 + 6202 1.06 0.029548
Target:  5'- gGAUCAGAACCCUCCGUAUUAUGCAAAc -3'
miRNA:   3'- -CUAGUCUUGGGAGGCAUAAUACGUUU- -5'
8627 3' -47 NC_002229.2 + 5949 0.68 0.998882
Target:  5'- uAUCGGAACCCUUCGUucgGUGa--- -3'
miRNA:   3'- cUAGUCUUGGGAGGCAuaaUACguuu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.