miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8629 3' -43.3 NC_002229.2 + 88916 0.66 0.999999
Target:  5'- aAAGCUGc---GCGaGCAGUCCu -3'
miRNA:   3'- -UUCGAUaagaCGC-CGUCAGGc -5'
8629 3' -43.3 NC_002229.2 + 143860 0.66 0.999998
Target:  5'- uAGCUAcUCuaUGCGGCccGUCUGg -3'
miRNA:   3'- uUCGAUaAG--ACGCCGu-CAGGC- -5'
8629 3' -43.3 NC_002229.2 + 168754 0.66 0.999998
Target:  5'- uAGCUAcUCuaUGCGGCccGUCUGg -3'
miRNA:   3'- uUCGAUaAG--ACGCCGu-CAGGC- -5'
8629 3' -43.3 NC_002229.2 + 87325 0.67 0.999997
Target:  5'- cAGUUAUUaCUG-GGUAGUCCc -3'
miRNA:   3'- uUCGAUAA-GACgCCGUCAGGc -5'
8629 3' -43.3 NC_002229.2 + 74265 0.67 0.999989
Target:  5'- aAAGUUGUacUUUGCGcGCAucGUCCGa -3'
miRNA:   3'- -UUCGAUA--AGACGC-CGU--CAGGC- -5'
8629 3' -43.3 NC_002229.2 + 68525 0.68 0.999959
Target:  5'- aAAGCgugaaacUUUGCGGCGGaCCGa -3'
miRNA:   3'- -UUCGaua----AGACGCCGUCaGGC- -5'
8629 3' -43.3 NC_002229.2 + 65524 0.69 0.999897
Target:  5'- uGAGCUGcuggGCGGCAGgggCCa -3'
miRNA:   3'- -UUCGAUaagaCGCCGUCa--GGc -5'
8629 3' -43.3 NC_002229.2 + 130899 0.7 0.999765
Target:  5'- uAGUUuuuUUUUGCGGCAGcUCCu -3'
miRNA:   3'- uUCGAu--AAGACGCCGUC-AGGc -5'
8629 3' -43.3 NC_002229.2 + 7812 0.7 0.999765
Target:  5'- uAGUUuuuUUUUGCGGCAGcUCCu -3'
miRNA:   3'- uUCGAu--AAGACGCCGUC-AGGc -5'
8629 3' -43.3 NC_002229.2 + 64511 0.71 0.999209
Target:  5'- uGGUUGgcUCUGCGGCGGgCCa -3'
miRNA:   3'- uUCGAUa-AGACGCCGUCaGGc -5'
8629 3' -43.3 NC_002229.2 + 61419 0.71 0.998777
Target:  5'- ----gGUUCUGCGGCAGccUCUGg -3'
miRNA:   3'- uucgaUAAGACGCCGUC--AGGC- -5'
8629 3' -43.3 NC_002229.2 + 49292 0.72 0.99816
Target:  5'- aAAGCguauuucUUCUGCGGCGGUUg- -3'
miRNA:   3'- -UUCGau-----AAGACGCCGUCAGgc -5'
8629 3' -43.3 NC_002229.2 + 132615 0.76 0.965239
Target:  5'- aAAGUugUAUUCUGCccGGUAGUCCGu -3'
miRNA:   3'- -UUCG--AUAAGACG--CCGUCAGGC- -5'
8629 3' -43.3 NC_002229.2 + 6097 0.76 0.965239
Target:  5'- aAAGUugUAUUCUGCccGGUAGUCCGu -3'
miRNA:   3'- -UUCG--AUAAGACG--CCGUCAGGC- -5'
8629 3' -43.3 NC_002229.2 + 5861 1.06 0.05492
Target:  5'- aAAGCUAUUCUGCGGCAGUCCGu -3'
miRNA:   3'- -UUCGAUAAGACGCCGUCAGGC- -5'
8629 3' -43.3 NC_002229.2 + 132851 1.06 0.05492
Target:  5'- aAAGCUAUUCUGCGGCAGUCCGu -3'
miRNA:   3'- -UUCGAUAAGACGCCGUCAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.