miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8629 5' -46.9 NC_002229.2 + 72022 0.66 0.99985
Target:  5'- --uGCUACaCGGGCAGAAUcccGCAc- -3'
miRNA:   3'- gccUGAUG-GCCCGUCUUA---UGUug -5'
8629 5' -46.9 NC_002229.2 + 6056 0.66 0.999748
Target:  5'- aCGGACUGCC--GCAGAAUAg--- -3'
miRNA:   3'- -GCCUGAUGGccCGUCUUAUguug -5'
8629 5' -46.9 NC_002229.2 + 142324 0.66 0.999748
Target:  5'- uGGGCUAUCaGGGUgcuguGGAAuaccUACAACg -3'
miRNA:   3'- gCCUGAUGG-CCCG-----UCUU----AUGUUG- -5'
8629 5' -46.9 NC_002229.2 + 132656 0.66 0.999748
Target:  5'- aCGGACUGCC--GCAGAAUAg--- -3'
miRNA:   3'- -GCCUGAUGGccCGUCUUAUguug -5'
8629 5' -46.9 NC_002229.2 + 170290 0.66 0.999748
Target:  5'- uGGGCUAUCaGGGUgcuguGGAAuaccUACAACg -3'
miRNA:   3'- gCCUGAUGG-CCCG-----UCUU----AUGUUG- -5'
8629 5' -46.9 NC_002229.2 + 75454 0.67 0.999196
Target:  5'- aGGACUGuuGGGaaauaAGGugggGCAGCa -3'
miRNA:   3'- gCCUGAUggCCCg----UCUua--UGUUG- -5'
8629 5' -46.9 NC_002229.2 + 84570 0.71 0.979455
Target:  5'- gGGAggAUCGGGCAGuaguccuaugauaGAUGCAGCg -3'
miRNA:   3'- gCCUgaUGGCCCGUC-------------UUAUGUUG- -5'
8629 5' -46.9 NC_002229.2 + 137587 0.72 0.974488
Target:  5'- gCGGAgCgUGCCGaGGCAGAggACGGCu -3'
miRNA:   3'- -GCCU-G-AUGGC-CCGUCUuaUGUUG- -5'
8629 5' -46.9 NC_002229.2 + 1125 0.72 0.974488
Target:  5'- gCGGAgCgUGCCGaGGCAGAggACGGCu -3'
miRNA:   3'- -GCCU-G-AUGGC-CCGUCUuaUGUUG- -5'
8629 5' -46.9 NC_002229.2 + 165193 0.75 0.909676
Target:  5'- uGGACguuuCCGGGCAGAGUGgAu- -3'
miRNA:   3'- gCCUGau--GGCCCGUCUUAUgUug -5'
8629 5' -46.9 NC_002229.2 + 147421 0.75 0.909676
Target:  5'- uGGACguuuCCGGGCAGAGUGgAu- -3'
miRNA:   3'- gCCUGau--GGCCCGUCUUAUgUug -5'
8629 5' -46.9 NC_002229.2 + 97273 0.76 0.873509
Target:  5'- uCGGGCUuuauauCCGGGgGGGAUAUGACa -3'
miRNA:   3'- -GCCUGAu-----GGCCCgUCUUAUGUUG- -5'
8629 5' -46.9 NC_002229.2 + 132814 1.07 0.023466
Target:  5'- aCGGACUACCGGGCAGAAUACAACu -3'
miRNA:   3'- -GCCUGAUGGCCCGUCUUAUGUUG- -5'
8629 5' -46.9 NC_002229.2 + 5898 1.07 0.023466
Target:  5'- aCGGACUACCGGGCAGAAUACAACu -3'
miRNA:   3'- -GCCUGAUGGCCCGUCUUAUGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.