miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8631 5' -52.2 NC_002229.2 + 133392 1.12 0.004447
Target:  5'- gGUAUACACCUGCAAGAGACGCCUGCCu -3'
miRNA:   3'- -CAUAUGUGGACGUUCUCUGCGGACGG- -5'
8631 5' -52.2 NC_002229.2 + 5319 1.12 0.004447
Target:  5'- gGUAUACACCUGCAAGAGACGCCUGCCu -3'
miRNA:   3'- -CAUAUGUGGACGUUCUCUGCGGACGG- -5'
8631 5' -52.2 NC_002229.2 + 146045 0.73 0.758205
Target:  5'- --cUGCACCUGguGGGGGUGCacaUGCCg -3'
miRNA:   3'- cauAUGUGGACguUCUCUGCGg--ACGG- -5'
8631 5' -52.2 NC_002229.2 + 166569 0.73 0.758205
Target:  5'- --cUGCACCUGguGGGGGUGCacaUGCCg -3'
miRNA:   3'- cauAUGUGGACguUCUCUGCGg--ACGG- -5'
8631 5' -52.2 NC_002229.2 + 59361 0.7 0.893655
Target:  5'- gGUAUACACC-GCAccAGuGAUGCCgGCg -3'
miRNA:   3'- -CAUAUGUGGaCGU--UCuCUGCGGaCGg -5'
8631 5' -52.2 NC_002229.2 + 93498 0.68 0.944824
Target:  5'- ---cACACCUGCGAGAuuccucCGC-UGCCa -3'
miRNA:   3'- cauaUGUGGACGUUCUcu----GCGgACGG- -5'
8631 5' -52.2 NC_002229.2 + 166331 0.67 0.978803
Target:  5'- -cAUAuCAgCUGCAAGcAGcucaGgGCCUGCCg -3'
miRNA:   3'- caUAU-GUgGACGUUC-UC----UgCGGACGG- -5'
8631 5' -52.2 NC_002229.2 + 94004 0.67 0.978803
Target:  5'- --uUGCGaauUCUGCGAacGAgGCCUGCCg -3'
miRNA:   3'- cauAUGU---GGACGUUcuCUgCGGACGG- -5'
8631 5' -52.2 NC_002229.2 + 146283 0.67 0.978803
Target:  5'- -cAUAuCAgCUGCAAGcAGcucaGgGCCUGCCg -3'
miRNA:   3'- caUAU-GUgGACGUUC-UC----UgCGGACGG- -5'
8631 5' -52.2 NC_002229.2 + 94620 0.66 0.986698
Target:  5'- aUGUACuaCUGCAAGAuACGCaagGCCa -3'
miRNA:   3'- cAUAUGugGACGUUCUcUGCGga-CGG- -5'
8631 5' -52.2 NC_002229.2 + 142522 0.66 0.988261
Target:  5'- ---cGCAUUUGCGacacgAGcGAUGUCUGCCa -3'
miRNA:   3'- cauaUGUGGACGU-----UCuCUGCGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.