miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8632 3' -48.8 NC_002229.2 + 134740 1.06 0.018975
Target:  5'- gAUGUUGCCCCAGAAGUUUUCCACAUAg -3'
miRNA:   3'- -UACAACGGGGUCUUCAAAAGGUGUAU- -5'
8632 3' -48.8 NC_002229.2 + 3972 0.91 0.146963
Target:  5'- gAUGUUGCCCCAGAAGUUUU-CACAUAg -3'
miRNA:   3'- -UACAACGGGGUCUUCAAAAgGUGUAU- -5'
8632 3' -48.8 NC_002229.2 + 814 0.71 0.942857
Target:  5'- -gGUUGCCCCGGggGcg--CCGCu-- -3'
miRNA:   3'- uaCAACGGGGUCuuCaaaaGGUGuau -5'
8632 3' -48.8 NC_002229.2 + 137897 0.71 0.942857
Target:  5'- -gGUUGCCCCGGggGcg--CCGCu-- -3'
miRNA:   3'- uaCAACGGGGUCuuCaaaaGGUGuau -5'
8632 3' -48.8 NC_002229.2 + 68939 0.69 0.983306
Target:  5'- gAUGUgugGCCgCGGAGGUgUUCUAUAUGg -3'
miRNA:   3'- -UACAa--CGGgGUCUUCAaAAGGUGUAU- -5'
8632 3' -48.8 NC_002229.2 + 138346 0.68 0.991351
Target:  5'- ----cGCCCCAGggGgcg-CCGCGg- -3'
miRNA:   3'- uacaaCGGGGUCuuCaaaaGGUGUau -5'
8632 3' -48.8 NC_002229.2 + 365 0.68 0.991351
Target:  5'- ----cGCCCCAGggGgcg-CCGCGg- -3'
miRNA:   3'- uacaaCGGGGUCuuCaaaaGGUGUau -5'
8632 3' -48.8 NC_002229.2 + 71748 0.66 0.997549
Target:  5'- gAUGUaGCCCaaaagggCGGAGGUUuUUCCGCAa- -3'
miRNA:   3'- -UACAaCGGG-------GUCUUCAA-AAGGUGUau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.