miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8636 3' -52.8 NC_002229.2 + 67711 0.67 0.968677
Target:  5'- aCGUUCACcgCUUUUACuccUGCGGCAg- -3'
miRNA:   3'- gGCAAGUGa-GAAAGUGc--GCGCCGUga -5'
8636 3' -52.8 NC_002229.2 + 3457 0.68 0.96218
Target:  5'- cCCuUUUGCUUgUUCACuGUGCGGCAUUa -3'
miRNA:   3'- -GGcAAGUGAGaAAGUG-CGCGCCGUGA- -5'
8636 3' -52.8 NC_002229.2 + 135254 0.68 0.96218
Target:  5'- cCCuUUUGCUUgUUCACuGUGCGGCAUUa -3'
miRNA:   3'- -GGcAAGUGAGaAAGUG-CGCGCCGUGA- -5'
8636 3' -52.8 NC_002229.2 + 122928 0.69 0.942003
Target:  5'- aCGUUCACaaUCUcuaUUCGCGgGCGGguUg -3'
miRNA:   3'- gGCAAGUG--AGA---AAGUGCgCGCCguGa -5'
8636 3' -52.8 NC_002229.2 + 151982 0.69 0.927061
Target:  5'- cCCGaugUCGCUCggUUAUGUGCGGaUACa -3'
miRNA:   3'- -GGCa--AGUGAGaaAGUGCGCGCC-GUGa -5'
8636 3' -52.8 NC_002229.2 + 934 0.7 0.899936
Target:  5'- cCCGUUCGgUCUacucacagagcccCGCGCGCGGCuCa -3'
miRNA:   3'- -GGCAAGUgAGAaa-----------GUGCGCGCCGuGa -5'
8636 3' -52.8 NC_002229.2 + 137777 0.7 0.899936
Target:  5'- cCCGUUCGgUCUacucacagagcccCGCGCGCGGCuCa -3'
miRNA:   3'- -GGCAAGUgAGAaa-----------GUGCGCGCCGuGa -5'
8636 3' -52.8 NC_002229.2 + 29345 0.71 0.883801
Target:  5'- uCCGUcagCACUCUggcCACGCGUagaaGGUGCUg -3'
miRNA:   3'- -GGCAa--GUGAGAaa-GUGCGCG----CCGUGA- -5'
8636 3' -52.8 NC_002229.2 + 138039 0.72 0.812372
Target:  5'- aCGgcgUCGCUCccaCACGCGCGGCcccGCg -3'
miRNA:   3'- gGCa--AGUGAGaaaGUGCGCGCCG---UGa -5'
8636 3' -52.8 NC_002229.2 + 673 0.72 0.812372
Target:  5'- aCGgcgUCGCUCccaCACGCGCGGCcccGCg -3'
miRNA:   3'- gGCa--AGUGAGaaaGUGCGCGCCG---UGa -5'
8636 3' -52.8 NC_002229.2 + 129188 0.73 0.774126
Target:  5'- uCCGUUCGaagcagugauuaUCUUUCugGgGgGGCACUa -3'
miRNA:   3'- -GGCAAGUg-----------AGAAAGugCgCgCCGUGA- -5'
8636 3' -52.8 NC_002229.2 + 9524 0.74 0.727688
Target:  5'- uCCGUUCgaagcagugauuAUUCUUUCugGgGgGGCACUa -3'
miRNA:   3'- -GGCAAG------------UGAGAAAGugCgCgCCGUGA- -5'
8636 3' -52.8 NC_002229.2 + 135498 0.92 0.089497
Target:  5'- uCCGUUCGCUCUUUCAUGCGCaGCAUUa -3'
miRNA:   3'- -GGCAAGUGAGAAAGUGCGCGcCGUGA- -5'
8636 3' -52.8 NC_002229.2 + 3213 0.92 0.089497
Target:  5'- uCCGUUCGCUCUUUCAUGCGCaGCAUUa -3'
miRNA:   3'- -GGCAAGUGAGAAAGUGCGCGcCGUGA- -5'
8636 3' -52.8 NC_002229.2 + 2970 1.06 0.011756
Target:  5'- cCCGUUCACUCUUUCACGCGCGGCAUa -3'
miRNA:   3'- -GGCAAGUGAGAAAGUGCGCGCCGUGa -5'
8636 3' -52.8 NC_002229.2 + 135742 1.11 0.005697
Target:  5'- cCCGUUCACUCUUUCACGCGCGGCACUa -3'
miRNA:   3'- -GGCAAGUGAGAAAGUGCGCGCCGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.