miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8637 3' -55.1 NC_002229.2 + 135983 1.09 0.003381
Target:  5'- aCCAGCCCUGCGCGCUUGCGCUAUAUAc -3'
miRNA:   3'- -GGUCGGGACGCGCGAACGCGAUAUAU- -5'
8637 3' -55.1 NC_002229.2 + 2729 1.09 0.003381
Target:  5'- aCCAGCCCUGCGCGCUUGCGCUAUAUAc -3'
miRNA:   3'- -GGUCGGGACGCGCGAACGCGAUAUAU- -5'
8637 3' -55.1 NC_002229.2 + 166531 0.68 0.854849
Target:  5'- -aGGCCCUGaGCuGCUUGCaGCUgAUAUGa -3'
miRNA:   3'- ggUCGGGACgCG-CGAACG-CGA-UAUAU- -5'
8637 3' -55.1 NC_002229.2 + 146083 0.68 0.854849
Target:  5'- -aGGCCCUGaGCuGCUUGCaGCUgAUAUGa -3'
miRNA:   3'- ggUCGGGACgCG-CGAACG-CGA-UAUAU- -5'
8637 3' -55.1 NC_002229.2 + 887 0.67 0.87759
Target:  5'- aCGGUCgUGCGCGCggggccGCGC-GUGUGg -3'
miRNA:   3'- gGUCGGgACGCGCGaa----CGCGaUAUAU- -5'
8637 3' -55.1 NC_002229.2 + 137824 0.67 0.87759
Target:  5'- aCGGUCgUGCGCGCggggccGCGC-GUGUGg -3'
miRNA:   3'- gGUCGGgACGCGCGaa----CGCGaUAUAU- -5'
8637 3' -55.1 NC_002229.2 + 1006 0.67 0.904745
Target:  5'- -uGGCCCUGgG-GCUUGgGCUGa--- -3'
miRNA:   3'- ggUCGGGACgCgCGAACgCGAUauau -5'
8637 3' -55.1 NC_002229.2 + 137705 0.67 0.904745
Target:  5'- -uGGCCCUGgG-GCUUGgGCUGa--- -3'
miRNA:   3'- ggUCGGGACgCgCGAACgCGAUauau -5'
8637 3' -55.1 NC_002229.2 + 138538 0.66 0.922601
Target:  5'- aCAGCCCggccaauagGCGCGCgguggGCGUa----- -3'
miRNA:   3'- gGUCGGGa--------CGCGCGaa---CGCGauauau -5'
8637 3' -55.1 NC_002229.2 + 91403 0.66 0.922601
Target:  5'- uUCGGCCCcgcacuuaucUGCGUagucGCUUGCGCg----- -3'
miRNA:   3'- -GGUCGGG----------ACGCG----CGAACGCGauauau -5'
8637 3' -55.1 NC_002229.2 + 173 0.66 0.922601
Target:  5'- aCAGCCCggccaauagGCGCGCgguggGCGUa----- -3'
miRNA:   3'- gGUCGGGa--------CGCGCGaa---CGCGauauau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.