miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8638 5' -52.2 NC_002229.2 + 2625 1.09 0.006418
Target:  5'- uAUCUGCGCAUGCCUGGUUUUCGACACa -3'
miRNA:   3'- -UAGACGCGUACGGACCAAAAGCUGUG- -5'
8638 5' -52.2 NC_002229.2 + 136000 0.67 0.959094
Target:  5'- gGUCUGCGCAUGC---GUUUUgGACuGCg -3'
miRNA:   3'- -UAGACGCGUACGgacCAAAAgCUG-UG- -5'
8638 5' -52.2 NC_002229.2 + 16213 0.66 0.977653
Target:  5'- uGUCaGCGUccGCCUaaGGUggaauugUCGACACu -3'
miRNA:   3'- -UAGaCGCGuaCGGA--CCAaa-----AGCUGUG- -5'
8638 5' -52.2 NC_002229.2 + 2711 0.67 0.959094
Target:  5'- gGUCUGCGCAUGC---GUUUUgGACuGCg -3'
miRNA:   3'- -UAGACGCGUACGgacCAAAAgCUG-UG- -5'
8638 5' -52.2 NC_002229.2 + 136087 1.09 0.006418
Target:  5'- uAUCUGCGCAUGCCUGGUUUUCGACACa -3'
miRNA:   3'- -UAGACGCGUACGGACCAAAAGCUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.