miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8639 3' -47.2 NC_002229.2 + 136186 0.66 0.999932
Target:  5'- ------nGCAUGCGCAGaCCGcuuACGg -3'
miRNA:   3'- uguuuugCGUACGCGUCaGGUuu-UGC- -5'
8639 3' -47.2 NC_002229.2 + 93684 0.66 0.999882
Target:  5'- cACAAAugGgGUGUGCAG-CUu-GGCGa -3'
miRNA:   3'- -UGUUUugCgUACGCGUCaGGuuUUGC- -5'
8639 3' -47.2 NC_002229.2 + 136043 0.66 0.999846
Target:  5'- -gAGGGCGCAUGCGUAcUgCAAAAUu -3'
miRNA:   3'- ugUUUUGCGUACGCGUcAgGUUUUGc -5'
8639 3' -47.2 NC_002229.2 + 2525 0.66 0.999932
Target:  5'- ------nGCAUGCGCAGaCCGcuuACGg -3'
miRNA:   3'- uguuuugCGUACGCGUCaGGUuu-UGC- -5'
8639 3' -47.2 NC_002229.2 + 135747 0.66 0.999801
Target:  5'- aACGucuguGCGCAUGCGCgaugAGUgCgCAGGGCGu -3'
miRNA:   3'- -UGUuu---UGCGUACGCG----UCA-G-GUUUUGC- -5'
8639 3' -47.2 NC_002229.2 + 135818 0.66 0.999882
Target:  5'- gGCGuucACGCAUGCGcCAGUUaugCAuGACGc -3'
miRNA:   3'- -UGUuu-UGCGUACGC-GUCAG---GUuUUGC- -5'
8639 3' -47.2 NC_002229.2 + 2893 0.66 0.999882
Target:  5'- gGCGuucACGCAUGCGcCAGUUaugCAuGACGc -3'
miRNA:   3'- -UGUuu-UGCGUACGC-GUCAG---GUuUUGC- -5'
8639 3' -47.2 NC_002229.2 + 2964 0.66 0.999801
Target:  5'- aACGucuguGCGCAUGCGCgaugAGUgCgCAGGGCGu -3'
miRNA:   3'- -UGUuu---UGCGUACGCG----UCA-G-GUUUUGC- -5'
8639 3' -47.2 NC_002229.2 + 2668 0.66 0.999846
Target:  5'- -gAGGGCGCAUGCGUAcUgCAAAAUu -3'
miRNA:   3'- ugUUUUGCGUACGCGUcAgGUUUUGc -5'
8639 3' -47.2 NC_002229.2 + 173681 0.67 0.999486
Target:  5'- -aGAGGC-CGUGCGCAGUCgGAGu-- -3'
miRNA:   3'- ugUUUUGcGUACGCGUCAGgUUUugc -5'
8639 3' -47.2 NC_002229.2 + 138933 0.67 0.999486
Target:  5'- -aGAGGC-CGUGCGCAGUCgGAGu-- -3'
miRNA:   3'- ugUUUUGcGUACGCGUCAGgUUUugc -5'
8639 3' -47.2 NC_002229.2 + 138988 0.67 0.999486
Target:  5'- -aGAGGC-CGUGCGCAGUCgGAGu-- -3'
miRNA:   3'- ugUUUUGcGUACGCGUCAGgUUUugc -5'
8639 3' -47.2 NC_002229.2 + 37269 0.67 0.999486
Target:  5'- gACGAGAUGgaAUGUGCAGcCCAucGCa -3'
miRNA:   3'- -UGUUUUGCg-UACGCGUCaGGUuuUGc -5'
8639 3' -47.2 NC_002229.2 + 27654 0.67 0.999486
Target:  5'- uGCGGAACGCGUGUGC---UgAGAGCGc -3'
miRNA:   3'- -UGUUUUGCGUACGCGucaGgUUUUGC- -5'
8639 3' -47.2 NC_002229.2 + 173626 0.67 0.999486
Target:  5'- -aGAGGC-CGUGCGCAGUCgGAGu-- -3'
miRNA:   3'- ugUUUUGcGUACGCGUCAGgUUUugc -5'
8639 3' -47.2 NC_002229.2 + 2476 0.68 0.998546
Target:  5'- uGCAGuACGCAUGCGCccUCCAc---- -3'
miRNA:   3'- -UGUUuUGCGUACGCGucAGGUuuugc -5'
8639 3' -47.2 NC_002229.2 + 136235 0.68 0.998546
Target:  5'- uGCAGuACGCAUGCGCccUCCAc---- -3'
miRNA:   3'- -UGUUuUGCGUACGCGucAGGUuuugc -5'
8639 3' -47.2 NC_002229.2 + 91197 0.68 0.999359
Target:  5'- cGCAAGcgacuACGCAgauaaGUGCGGggCCGAAGCa -3'
miRNA:   3'- -UGUUU-----UGCGUa----CGCGUCa-GGUUUUGc -5'
8639 3' -47.2 NC_002229.2 + 135874 0.69 0.99699
Target:  5'- ----uGCGCAUGCGCGuguGUCgAAAACc -3'
miRNA:   3'- uguuuUGCGUACGCGU---CAGgUUUUGc -5'
8639 3' -47.2 NC_002229.2 + 2837 0.69 0.99699
Target:  5'- ----uGCGCAUGCGCGuguGUCgAAAACc -3'
miRNA:   3'- uguuuUGCGUACGCGU---CAGgUUUUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.