Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8639 | 3' | -47.2 | NC_002229.2 | + | 2476 | 0.68 | 0.998546 |
Target: 5'- uGCAGuACGCAUGCGCccUCCAc---- -3' miRNA: 3'- -UGUUuUGCGUACGCGucAGGUuuugc -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 2500 | 1.09 | 0.022281 |
Target: 5'- cACAAAACGCAUGCGCAGUCCAAAACGc -3' miRNA: 3'- -UGUUUUGCGUACGCGUCAGGUUUUGC- -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 2525 | 0.66 | 0.999932 |
Target: 5'- ------nGCAUGCGCAGaCCGcuuACGg -3' miRNA: 3'- uguuuugCGUACGCGUCaGGUuu-UGC- -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 2569 | 0.87 | 0.376121 |
Target: 5'- cACAAAACGCAUGCGCAGaccaauuacCCAAAACa -3' miRNA: 3'- -UGUUUUGCGUACGCGUCa--------GGUUUUGc -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 2647 | 0.7 | 0.994252 |
Target: 5'- gACAcacGCGCAUGCGCAGauacacUCCAccguACGc -3' miRNA: 3'- -UGUuu-UGCGUACGCGUC------AGGUuu--UGC- -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 2668 | 0.66 | 0.999846 |
Target: 5'- -gAGGGCGCAUGCGUAcUgCAAAAUu -3' miRNA: 3'- ugUUUUGCGUACGCGUcAgGUUUUGc -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 2737 | 0.71 | 0.98833 |
Target: 5'- -gAGGGCGCAUGCGUAcugCCGuAAGCGg -3' miRNA: 3'- ugUUUUGCGUACGCGUca-GGU-UUUGC- -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 2768 | 0.7 | 0.993321 |
Target: 5'- uCAucGCGCAUGCGCAcagacGUUCAAAuaaugGCGg -3' miRNA: 3'- uGUuuUGCGUACGCGU-----CAGGUUU-----UGC- -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 2837 | 0.69 | 0.99699 |
Target: 5'- ----uGCGCAUGCGCGuguGUCgAAAACc -3' miRNA: 3'- uguuuUGCGUACGCGU---CAGgUUUUGc -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 2893 | 0.66 | 0.999882 |
Target: 5'- gGCGuucACGCAUGCGcCAGUUaugCAuGACGc -3' miRNA: 3'- -UGUuu-UGCGUACGC-GUCAG---GUuUUGC- -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 2964 | 0.66 | 0.999801 |
Target: 5'- aACGucuguGCGCAUGCGCgaugAGUgCgCAGGGCGu -3' miRNA: 3'- -UGUuu---UGCGUACGCG----UCA-G-GUUUUGC- -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 27654 | 0.67 | 0.999486 |
Target: 5'- uGCGGAACGCGUGUGC---UgAGAGCGc -3' miRNA: 3'- -UGUUUUGCGUACGCGucaGgUUUUGC- -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 37269 | 0.67 | 0.999486 |
Target: 5'- gACGAGAUGgaAUGUGCAGcCCAucGCa -3' miRNA: 3'- -UGUUUUGCg-UACGCGUCaGGUuuUGc -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 74437 | 0.69 | 0.998242 |
Target: 5'- aACGAGACGUaauaacuucaucAUGCGUGcGUCCAgGAACGc -3' miRNA: 3'- -UGUUUUGCG------------UACGCGU-CAGGU-UUUGC- -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 91197 | 0.68 | 0.999359 |
Target: 5'- cGCAAGcgacuACGCAgauaaGUGCGGggCCGAAGCa -3' miRNA: 3'- -UGUUU-----UGCGUa----CGCGUCa-GGUUUUGc -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 93684 | 0.66 | 0.999882 |
Target: 5'- cACAAAugGgGUGUGCAG-CUu-GGCGa -3' miRNA: 3'- -UGUUUugCgUACGCGUCaGGuuUUGC- -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 117802 | 0.75 | 0.921101 |
Target: 5'- aGCGAAAaacaGCA-GCGCAGUCUAAAuuACGa -3' miRNA: 3'- -UGUUUUg---CGUaCGCGUCAGGUUU--UGC- -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 118147 | 0.69 | 0.996436 |
Target: 5'- -----uUGCAUGCG-GGUCCAGAGCu -3' miRNA: 3'- uguuuuGCGUACGCgUCAGGUUUUGc -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 135747 | 0.66 | 0.999801 |
Target: 5'- aACGucuguGCGCAUGCGCgaugAGUgCgCAGGGCGu -3' miRNA: 3'- -UGUuu---UGCGUACGCG----UCA-G-GUUUUGC- -5' |
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8639 | 3' | -47.2 | NC_002229.2 | + | 135818 | 0.66 | 0.999882 |
Target: 5'- gGCGuucACGCAUGCGcCAGUUaugCAuGACGc -3' miRNA: 3'- -UGUuu-UGCGUACGC-GUCAG---GUuUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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