miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8639 3' -47.2 NC_002229.2 + 2668 0.66 0.999846
Target:  5'- -gAGGGCGCAUGCGUAcUgCAAAAUu -3'
miRNA:   3'- ugUUUUGCGUACGCGUcAgGUUUUGc -5'
8639 3' -47.2 NC_002229.2 + 2964 0.66 0.999801
Target:  5'- aACGucuguGCGCAUGCGCgaugAGUgCgCAGGGCGu -3'
miRNA:   3'- -UGUuu---UGCGUACGCG----UCA-G-GUUUUGC- -5'
8639 3' -47.2 NC_002229.2 + 27654 0.67 0.999486
Target:  5'- uGCGGAACGCGUGUGC---UgAGAGCGc -3'
miRNA:   3'- -UGUUUUGCGUACGCGucaGgUUUUGC- -5'
8639 3' -47.2 NC_002229.2 + 173626 0.67 0.999486
Target:  5'- -aGAGGC-CGUGCGCAGUCgGAGu-- -3'
miRNA:   3'- ugUUUUGcGUACGCGUCAGgUUUugc -5'
8639 3' -47.2 NC_002229.2 + 173681 0.67 0.999486
Target:  5'- -aGAGGC-CGUGCGCAGUCgGAGu-- -3'
miRNA:   3'- ugUUUUGcGUACGCGUCAGgUUUugc -5'
8639 3' -47.2 NC_002229.2 + 136235 0.68 0.998546
Target:  5'- uGCAGuACGCAUGCGCccUCCAc---- -3'
miRNA:   3'- -UGUUuUGCGUACGCGucAGGUuuugc -5'
8639 3' -47.2 NC_002229.2 + 2837 0.69 0.99699
Target:  5'- ----uGCGCAUGCGCGuguGUCgAAAACc -3'
miRNA:   3'- uguuuUGCGUACGCGU---CAGgUUUUGc -5'
8639 3' -47.2 NC_002229.2 + 136065 0.7 0.994252
Target:  5'- gACAcacGCGCAUGCGCAGauacacUCCAccguACGc -3'
miRNA:   3'- -UGUuu-UGCGUACGCGUC------AGGUuu--UGC- -5'
8639 3' -47.2 NC_002229.2 + 135944 0.7 0.993321
Target:  5'- uCAucGCGCAUGCGCAcagacGUUCAAAuaaugGCGg -3'
miRNA:   3'- uGUuuUGCGUACGCGU-----CAGGUUU-----UGC- -5'
8639 3' -47.2 NC_002229.2 + 2737 0.71 0.98833
Target:  5'- -gAGGGCGCAUGCGUAcugCCGuAAGCGg -3'
miRNA:   3'- ugUUUUGCGUACGCGUca-GGU-UUUGC- -5'
8639 3' -47.2 NC_002229.2 + 136143 0.87 0.376121
Target:  5'- cACAAAACGCAUGCGCAGaccaauuacCCAAAACa -3'
miRNA:   3'- -UGUUUUGCGUACGCGUCa--------GGUUUUGc -5'
8639 3' -47.2 NC_002229.2 + 136211 1.09 0.022281
Target:  5'- cACAAAACGCAUGCGCAGUCCAAAACGc -3'
miRNA:   3'- -UGUUUUGCGUACGCGUCAGGUUUUGC- -5'
8639 3' -47.2 NC_002229.2 + 136186 0.66 0.999932
Target:  5'- ------nGCAUGCGCAGaCCGcuuACGg -3'
miRNA:   3'- uguuuugCGUACGCGUCaGGUuu-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.