miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8639 5' -55.4 NC_002229.2 + 135975 0.66 0.942866
Target:  5'- uGCgCGCUUGCGcuauauacgcccugcGCAcucaucGCGCAUGCGCa -3'
miRNA:   3'- -UG-GCGAAUGC---------------CGUca----UGCGUACGCGg -5'
8639 5' -55.4 NC_002229.2 + 2737 0.66 0.942866
Target:  5'- uGCgCGCUUGCGcuauauacgcccugcGCAcucaucGCGCAUGCGCa -3'
miRNA:   3'- -UG-GCGAAUGC---------------CGUca----UGCGUACGCGg -5'
8639 5' -55.4 NC_002229.2 + 2778 0.66 0.941032
Target:  5'- cUUGUUUugGGUaauuGGUcuGCGCAUGCGUUu -3'
miRNA:   3'- uGGCGAAugCCG----UCA--UGCGUACGCGG- -5'
8639 5' -55.4 NC_002229.2 + 145471 0.66 0.941032
Target:  5'- gGCUGCUaauguUACGGCAGcACGCcaGuCGCa -3'
miRNA:   3'- -UGGCGA-----AUGCCGUCaUGCGuaC-GCGg -5'
8639 5' -55.4 NC_002229.2 + 135933 0.66 0.941032
Target:  5'- cUUGUUUugGGUaauuGGUcuGCGCAUGCGUUu -3'
miRNA:   3'- uGGCGAAugCCG----UCA--UGCGUACGCGG- -5'
8639 5' -55.4 NC_002229.2 + 163498 0.66 0.941032
Target:  5'- uCUGCUUAacCGGCAGUACaggaAUGUuuGCCu -3'
miRNA:   3'- uGGCGAAU--GCCGUCAUGcg--UACG--CGG- -5'
8639 5' -55.4 NC_002229.2 + 167143 0.66 0.941032
Target:  5'- gGCUGCUaauguUACGGCAGcACGCcaGuCGCa -3'
miRNA:   3'- -UGGCGA-----AUGCCGUCaUGCGuaC-GCGg -5'
8639 5' -55.4 NC_002229.2 + 149117 0.66 0.941032
Target:  5'- uCUGCUUAacCGGCAGUACaggaAUGUuuGCCu -3'
miRNA:   3'- uGGCGAAU--GCCGUCAUGcg--UACG--CGG- -5'
8639 5' -55.4 NC_002229.2 + 75025 0.66 0.926065
Target:  5'- aGCUGCcaacucugUAgGGCGGUugGCcAUG-GCCg -3'
miRNA:   3'- -UGGCGa-------AUgCCGUCAugCG-UACgCGG- -5'
8639 5' -55.4 NC_002229.2 + 136063 0.67 0.914315
Target:  5'- cACaCGCgcAUGcGCAgauacacuccaccGUACGCAUGCGCg -3'
miRNA:   3'- -UG-GCGaaUGC-CGU-------------CAUGCGUACGCGg -5'
8639 5' -55.4 NC_002229.2 + 2649 0.67 0.914315
Target:  5'- cACaCGCgcAUGcGCAgauacacuccaccGUACGCAUGCGCg -3'
miRNA:   3'- -UG-GCGaaUGC-CGU-------------CAUGCGUACGCGg -5'
8639 5' -55.4 NC_002229.2 + 897 0.67 0.908959
Target:  5'- aACgGCUccaACGGUcGUGCGCGcgGgGCCg -3'
miRNA:   3'- -UGgCGAa--UGCCGuCAUGCGUa-CgCGG- -5'
8639 5' -55.4 NC_002229.2 + 137814 0.67 0.908959
Target:  5'- aACgGCUccaACGGUcGUGCGCGcgGgGCCg -3'
miRNA:   3'- -UGgCGAa--UGCCGuCAUGCGUa-CgCGG- -5'
8639 5' -55.4 NC_002229.2 + 137873 0.67 0.902786
Target:  5'- uCCGUccGCGGCcGUgccgGCGCccagGCGCCg -3'
miRNA:   3'- uGGCGaaUGCCGuCA----UGCGua--CGCGG- -5'
8639 5' -55.4 NC_002229.2 + 839 0.67 0.902786
Target:  5'- uCCGUccGCGGCcGUgccgGCGCccagGCGCCg -3'
miRNA:   3'- uGGCGaaUGCCGuCA----UGCGua--CGCGG- -5'
8639 5' -55.4 NC_002229.2 + 2916 0.68 0.848551
Target:  5'- -gCGCgcAgGGCuGGUucggguaaggcguucACGCAUGCGCCa -3'
miRNA:   3'- ugGCGaaUgCCG-UCA---------------UGCGUACGCGG- -5'
8639 5' -55.4 NC_002229.2 + 135795 0.68 0.848551
Target:  5'- -gCGCgcAgGGCuGGUucggguaaggcguucACGCAUGCGCCa -3'
miRNA:   3'- ugGCGaaUgCCG-UCA---------------UGCGUACGCGG- -5'
8639 5' -55.4 NC_002229.2 + 2506 0.69 0.811845
Target:  5'- -aCGCaUGC-GCAGUccaaaACGCAUGCGCa -3'
miRNA:   3'- ugGCGaAUGcCGUCA-----UGCGUACGCGg -5'
8639 5' -55.4 NC_002229.2 + 136205 0.69 0.811845
Target:  5'- -aCGCaUGC-GCAGUccaaaACGCAUGCGCa -3'
miRNA:   3'- ugGCGaAUGcCGUCA-----UGCGUACGCGg -5'
8639 5' -55.4 NC_002229.2 + 135990 0.7 0.784977
Target:  5'- uGCCGUaaGCGGUc-UGCGCAUGCGUUu -3'
miRNA:   3'- -UGGCGaaUGCCGucAUGCGUACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.