Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8639 | 5' | -55.4 | NC_002229.2 | + | 2778 | 0.66 | 0.941032 |
Target: 5'- cUUGUUUugGGUaauuGGUcuGCGCAUGCGUUu -3' miRNA: 3'- uGGCGAAugCCG----UCA--UGCGUACGCGG- -5' |
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8639 | 5' | -55.4 | NC_002229.2 | + | 2737 | 0.66 | 0.942866 |
Target: 5'- uGCgCGCUUGCGcuauauacgcccugcGCAcucaucGCGCAUGCGCa -3' miRNA: 3'- -UG-GCGAAUGC---------------CGUca----UGCGUACGCGg -5' |
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8639 | 5' | -55.4 | NC_002229.2 | + | 2721 | 0.7 | 0.784977 |
Target: 5'- uGCCGUaaGCGGUc-UGCGCAUGCGUUu -3' miRNA: 3'- -UGGCGaaUGCCGucAUGCGUACGCGG- -5' |
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8639 | 5' | -55.4 | NC_002229.2 | + | 2649 | 0.67 | 0.914315 |
Target: 5'- cACaCGCgcAUGcGCAgauacacuccaccGUACGCAUGCGCg -3' miRNA: 3'- -UG-GCGaaUGC-CGU-------------CAUGCGUACGCGg -5' |
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8639 | 5' | -55.4 | NC_002229.2 | + | 2535 | 1.11 | 0.002815 |
Target: 5'- gACCGCUUACGGCAGUACGCAUGCGCCc -3' miRNA: 3'- -UGGCGAAUGCCGUCAUGCGUACGCGG- -5' |
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8639 | 5' | -55.4 | NC_002229.2 | + | 2506 | 0.69 | 0.811845 |
Target: 5'- -aCGCaUGC-GCAGUccaaaACGCAUGCGCa -3' miRNA: 3'- ugGCGaAUGcCGUCA-----UGCGUACGCGg -5' |
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8639 | 5' | -55.4 | NC_002229.2 | + | 2461 | 0.7 | 0.784059 |
Target: 5'- gACCacaauaaauuuuGCAGUACGCAUGCGCCc -3' miRNA: 3'- -UGGcgaaugc-----CGUCAUGCGUACGCGG- -5' |
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8639 | 5' | -55.4 | NC_002229.2 | + | 897 | 0.67 | 0.908959 |
Target: 5'- aACgGCUccaACGGUcGUGCGCGcgGgGCCg -3' miRNA: 3'- -UGgCGAa--UGCCGuCAUGCGUa-CgCGG- -5' |
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8639 | 5' | -55.4 | NC_002229.2 | + | 839 | 0.67 | 0.902786 |
Target: 5'- uCCGUccGCGGCcGUgccgGCGCccagGCGCCg -3' miRNA: 3'- uGGCGaaUGCCGuCA----UGCGua--CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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