Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8640 | 3' | -50.4 | NC_002229.2 | + | 125 | 1.12 | 0.006727 |
Target: 5'- cCGCCGCCAAUAGCUACGGCAnACAGCc -3' miRNA: 3'- -GCGGCGGUUAUCGAUGCCGUnUGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 173344 | 0.68 | 0.984728 |
Target: 5'- uGCCGCCAAacuuguGCcaaACGGaCGggUAGCg -3' miRNA: 3'- gCGGCGGUUau----CGa--UGCC-GUnuGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 137968 | 0.67 | 0.989533 |
Target: 5'- -cCCGCCGA-GGCUGacagaGGCGaacucuucGCGGCg -3' miRNA: 3'- gcGGCGGUUaUCGAUg----CCGUn-------UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 138389 | 0.66 | 0.997288 |
Target: 5'- uGUnuGCC-GUAGCUAUuGGCg-GCGGg -3' miRNA: 3'- gCGg-CGGuUAUCGAUG-CCGunUGUCg -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 105548 | 0.74 | 0.836744 |
Target: 5'- -uUCGCCcguuGUGGCUcACGGCGgGCGGUu -3' miRNA: 3'- gcGGCGGu---UAUCGA-UGCCGUnUGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 166949 | 0.73 | 0.884061 |
Target: 5'- uGCUGCCGuaacauUAGCagcccgACGGCGguuccaGCAGCu -3' miRNA: 3'- gCGGCGGUu-----AUCGa-----UGCCGUn-----UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 1003 | 0.72 | 0.891143 |
Target: 5'- aCGUgGCCcuggGGCUugGGCugagcGCAGUg -3' miRNA: 3'- -GCGgCGGuua-UCGAugCCGun---UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 164365 | 0.71 | 0.93677 |
Target: 5'- cCGCUGCCcAUAGCccacgcuccgguCGGCcuggACAGCa -3' miRNA: 3'- -GCGGCGGuUAUCGau----------GCCGun--UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 91772 | 0.7 | 0.952418 |
Target: 5'- -aCCGCgAucGUAGgUugGGUAuuGCAGCc -3' miRNA: 3'- gcGGCGgU--UAUCgAugCCGUn-UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 84206 | 0.68 | 0.982801 |
Target: 5'- aCGUCGCUcg-AGCUgGCGGUa-AguGCu -3' miRNA: 3'- -GCGGCGGuuaUCGA-UGCCGunUguCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 817 | 0.69 | 0.973227 |
Target: 5'- gCGCCGCUcggGGCUAcCGGgGuccguccGCGGCc -3' miRNA: 3'- -GCGGCGGuuaUCGAU-GCCgUn------UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 7831 | 0.7 | 0.952418 |
Target: 5'- uGCCGCCAGcUAGUUGagaaGCGcACAGa -3' miRNA: 3'- gCGGCGGUU-AUCGAUgc--CGUnUGUCg -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 151 | 0.86 | 0.249029 |
Target: 5'- -cCCgGCCAAUAGCUACGcGCAgACAGCc -3' miRNA: 3'- gcGG-CGGUUAUCGAUGC-CGUnUGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 68306 | 0.69 | 0.973227 |
Target: 5'- gCGUCGCauauauAUAGCUAuCGGUccGCcGCa -3' miRNA: 3'- -GCGGCGgu----UAUCGAU-GCCGunUGuCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 145471 | 0.75 | 0.762865 |
Target: 5'- gGCUGCUAAU-GUUACGGCa-GCAcGCc -3' miRNA: 3'- gCGGCGGUUAuCGAUGCCGunUGU-CG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 137667 | 0.7 | 0.948117 |
Target: 5'- uCGgCGCCug-GGCgcCGGCAcgGCcGCg -3' miRNA: 3'- -GCgGCGGuuaUCGauGCCGUn-UGuCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 43736 | 0.69 | 0.978404 |
Target: 5'- cCGUCgGCCGAUauaugaaugAGUggGCGGCAauCAGUa -3' miRNA: 3'- -GCGG-CGGUUA---------UCGa-UGCCGUnuGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 18166 | 0.68 | 0.988681 |
Target: 5'- gCGCCuGCCGAUAuuucauGCUAUGGCucaacuagacuugACAGg -3' miRNA: 3'- -GCGG-CGGUUAU------CGAUGCCGun-----------UGUCg -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 147981 | 0.75 | 0.791775 |
Target: 5'- aGaCUGCUcgGGUGGCUGCGGgAgggGCAGCg -3' miRNA: 3'- gC-GGCGG--UUAUCGAUGCCgUn--UGUCG- -5' |
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8640 | 3' | -50.4 | NC_002229.2 | + | 168127 | 0.72 | 0.891143 |
Target: 5'- aGCCGCgAguAUAGCUAUGaCAcGCAGg -3' miRNA: 3'- gCGGCGgU--UAUCGAUGCcGUnUGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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