miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8640 3' -50.4 NC_002229.2 + 78334 0.66 0.996792
Target:  5'- aGCCGgCGGaGGUUugGGCuuggaAGCc -3'
miRNA:   3'- gCGGCgGUUaUCGAugCCGunug-UCG- -5'
8640 3' -50.4 NC_002229.2 + 84206 0.68 0.982801
Target:  5'- aCGUCGCUcg-AGCUgGCGGUa-AguGCu -3'
miRNA:   3'- -GCGGCGGuuaUCGA-UGCCGunUguCG- -5'
8640 3' -50.4 NC_002229.2 + 91772 0.7 0.952418
Target:  5'- -aCCGCgAucGUAGgUugGGUAuuGCAGCc -3'
miRNA:   3'- gcGGCGgU--UAUCgAugCCGUn-UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 105548 0.74 0.836744
Target:  5'- -uUCGCCcguuGUGGCUcACGGCGgGCGGUu -3'
miRNA:   3'- gcGGCGGu---UAUCGA-UGCCGUnUGUCG- -5'
8640 3' -50.4 NC_002229.2 + 106628 0.68 0.988085
Target:  5'- aCGauaUGCCAuuGUGGCUAUGuuGCAaGCAGa -3'
miRNA:   3'- -GCg--GCGGU--UAUCGAUGC--CGUnUGUCg -5'
8640 3' -50.4 NC_002229.2 + 130881 0.7 0.952418
Target:  5'- uGCCGCCAGcUAGUUGagaaGCGcACAGa -3'
miRNA:   3'- gCGGCGGUU-AUCGAUgc--CGUnUGUCg -5'
8640 3' -50.4 NC_002229.2 + 137667 0.7 0.948117
Target:  5'- uCGgCGCCug-GGCgcCGGCAcgGCcGCg -3'
miRNA:   3'- -GCgGCGGuuaUCGauGCCGUn-UGuCG- -5'
8640 3' -50.4 NC_002229.2 + 137708 0.72 0.891143
Target:  5'- aCGUgGCCcuggGGCUugGGCugagcGCAGUg -3'
miRNA:   3'- -GCGgCGGuua-UCGAugCCGun---UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 137895 0.69 0.973227
Target:  5'- gCGCCGCUcggGGCUAcCGGgGuccguccGCGGCc -3'
miRNA:   3'- -GCGGCGGuuaUCGAU-GCCgUn------UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 137968 0.67 0.989533
Target:  5'- -cCCGCCGA-GGCUGacagaGGCGaacucuucGCGGCg -3'
miRNA:   3'- gcGGCGGUUaUCGAUg----CCGUn-------UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 138057 0.67 0.993455
Target:  5'- gCGCCGUgGGgcGCgcggACGGCGucgcucccacacgcGCGGCc -3'
miRNA:   3'- -GCGGCGgUUauCGa---UGCCGUn-------------UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 138389 0.66 0.997288
Target:  5'- uGUnuGCC-GUAGCUAUuGGCg-GCGGg -3'
miRNA:   3'- gCGg-CGGuUAUCGAUG-CCGunUGUCg -5'
8640 3' -50.4 NC_002229.2 + 138560 0.86 0.249029
Target:  5'- -cCCgGCCAAUAGCUACGcGCAgACAGCc -3'
miRNA:   3'- gcGG-CGGUUAUCGAUGC-CGUnUGUCG- -5'
8640 3' -50.4 NC_002229.2 + 138586 1.12 0.006727
Target:  5'- cCGCCGCCAAUAGCUACGGCAnACAGCc -3'
miRNA:   3'- -GCGGCGGUUAUCGAUGCCGUnUGUCG- -5'
8640 3' -50.4 NC_002229.2 + 139270 0.68 0.984728
Target:  5'- uGCCGCCAAacuuguGCcaaACGGaCGggUAGCg -3'
miRNA:   3'- gCGGCGGUUau----CGa--UGCC-GUnuGUCG- -5'
8640 3' -50.4 NC_002229.2 + 144487 0.72 0.891143
Target:  5'- aGCCGCgAguAUAGCUAUGaCAcGCAGg -3'
miRNA:   3'- gCGGCGgU--UAUCGAUGCcGUnUGUCg -5'
8640 3' -50.4 NC_002229.2 + 145471 0.75 0.762865
Target:  5'- gGCUGCUAAU-GUUACGGCa-GCAcGCc -3'
miRNA:   3'- gCGGCGGUUAuCGAUGCCGunUGU-CG- -5'
8640 3' -50.4 NC_002229.2 + 145665 0.73 0.884061
Target:  5'- uGCUGCCGuaacauUAGCagcccgACGGCGguuccaGCAGCu -3'
miRNA:   3'- gCGGCGGUu-----AUCGa-----UGCCGUn-----UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 146687 0.67 0.994005
Target:  5'- cCGuuGCCAAacGaucccagaGGCAgaGCAGCg -3'
miRNA:   3'- -GCggCGGUUauCgaug----CCGUn-UGUCG- -5'
8640 3' -50.4 NC_002229.2 + 147981 0.75 0.791775
Target:  5'- aGaCUGCUcgGGUGGCUGCGGgAgggGCAGCg -3'
miRNA:   3'- gC-GGCGG--UUAUCGAUGCCgUn--UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.