miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8641 5' -61.4 NC_002229.2 + 138729 1.08 0.001529
Target:  5'- uCUCGCAGCCCCCGGAUCCGGAUCCGAu -3'
miRNA:   3'- -GAGCGUCGGGGGCCUAGGCCUAGGCU- -5'
8641 5' -61.4 NC_002229.2 + 173885 0.75 0.258915
Target:  5'- uCUCGCAGCCCCCGGAUCC-------- -3'
miRNA:   3'- -GAGCGUCGGGGGCCUAGGccuaggcu -5'
8641 5' -61.4 NC_002229.2 + 138515 0.72 0.382321
Target:  5'- -cCGgGGUCUgcgggaUCGGAUCCGGAUCCGGg -3'
miRNA:   3'- gaGCgUCGGG------GGCCUAGGCCUAGGCU- -5'
8641 5' -61.4 NC_002229.2 + 147127 0.7 0.492835
Target:  5'- gUUGCAGCCCCCcGAguaCGGGgggCCGGc -3'
miRNA:   3'- gAGCGUCGGGGGcCUag-GCCUa--GGCU- -5'
8641 5' -61.4 NC_002229.2 + 165488 0.7 0.492835
Target:  5'- gUUGCAGCCCCCcGAguaCGGGgggCCGGc -3'
miRNA:   3'- gAGCGUCGGGGGcCUag-GCCUa--GGCU- -5'
8641 5' -61.4 NC_002229.2 + 164834 0.69 0.558083
Target:  5'- aCUCGauGUCCCCGGAUUCGGGggaaCCGu -3'
miRNA:   3'- -GAGCguCGGGGGCCUAGGCCUa---GGCu -5'
8641 5' -61.4 NC_002229.2 + 147780 0.69 0.558083
Target:  5'- aCUCGauGUCCCCGGAUUCGGGggaaCCGu -3'
miRNA:   3'- -GAGCguCGGGGGCCUAGGCCUa---GGCu -5'
8641 5' -61.4 NC_002229.2 + 123261 0.66 0.739358
Target:  5'- aUCGCAGCUCCCGGcguauacGUCUaGAUuuGu -3'
miRNA:   3'- gAGCGUCGGGGGCC-------UAGGcCUAggCu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.