miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8642 3' -54.5 NC_002229.2 + 106999 0.66 0.961625
Target:  5'- gAGAAugCUCUCGCuuggaaacGGaCCGcgaaACAGGCc -3'
miRNA:   3'- gUUUUugGAGAGCG--------CC-GGC----UGUCCGu -5'
8642 3' -54.5 NC_002229.2 + 56193 0.66 0.945791
Target:  5'- aCAAAAugCUCUgGuuGCCGACAaGCc -3'
miRNA:   3'- -GUUUUugGAGAgCgcCGGCUGUcCGu -5'
8642 3' -54.5 NC_002229.2 + 71880 0.66 0.941248
Target:  5'- --uAGGCgUCggGCGGCCGACucaauucGGCAg -3'
miRNA:   3'- guuUUUGgAGagCGCCGGCUGu------CCGU- -5'
8642 3' -54.5 NC_002229.2 + 730 0.67 0.936465
Target:  5'- aCAGAGGCgaaCUCuUCGCGGCggcaaUGGCGGGUg -3'
miRNA:   3'- -GUUUUUG---GAG-AGCGCCG-----GCUGUCCGu -5'
8642 3' -54.5 NC_002229.2 + 137981 0.67 0.936465
Target:  5'- aCAGAGGCgaaCUCuUCGCGGCggcaaUGGCGGGUg -3'
miRNA:   3'- -GUUUUUG---GAG-AGCGCCG-----GCUGUCCGu -5'
8642 3' -54.5 NC_002229.2 + 693 0.69 0.860493
Target:  5'- ---cGGCCgacCGCGGCCuGCGGGCGa -3'
miRNA:   3'- guuuUUGGagaGCGCCGGcUGUCCGU- -5'
8642 3' -54.5 NC_002229.2 + 138018 0.69 0.860493
Target:  5'- ---cGGCCgacCGCGGCCuGCGGGCGa -3'
miRNA:   3'- guuuUUGGagaGCGCCGGcUGUCCGU- -5'
8642 3' -54.5 NC_002229.2 + 137426 0.9 0.071717
Target:  5'- -uAAAACCUCUCGCGGCCGACAGaCAg -3'
miRNA:   3'- guUUUUGGAGAGCGCCGGCUGUCcGU- -5'
8642 3' -54.5 NC_002229.2 + 1285 0.9 0.071717
Target:  5'- -uAAAACCUCUCGCGGCCGACAGaCAg -3'
miRNA:   3'- guUUUUGGAGAGCGCCGGCUGUCcGU- -5'
8642 3' -54.5 NC_002229.2 + 173709 1.09 0.004516
Target:  5'- cCAAAAACCUCUCGCGGCCGACAGGCAg -3'
miRNA:   3'- -GUUUUUGGAGAGCGCCGGCUGUCCGU- -5'
8642 3' -54.5 NC_002229.2 + 138905 1.09 0.004516
Target:  5'- cCAAAAACCUCUCGCGGCCGACAGGCAg -3'
miRNA:   3'- -GUUUUUGGAGAGCGCCGGCUGUCCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.