miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8644 5' -50.1 NC_002229.2 + 823 0.66 0.998365
Target:  5'- gGGCGCGgGggUUgccccgggGGCGCCG-CucCCg -3'
miRNA:   3'- -CCGCGCgUaaAAaa------CCGCGGUuGu-GG- -5'
8644 5' -50.1 NC_002229.2 + 138049 0.7 0.960127
Target:  5'- gGGCGCGCGgac---GGCGUCGcucccACACg -3'
miRNA:   3'- -CCGCGCGUaaaaaaCCGCGGU-----UGUGg -5'
8644 5' -50.1 NC_002229.2 + 48427 0.72 0.930471
Target:  5'- aGGCGuCGCccuuauuugUGGgGCCAcguGCACCg -3'
miRNA:   3'- -CCGC-GCGuaaaaa---ACCgCGGU---UGUGG- -5'
8644 5' -50.1 NC_002229.2 + 1044 0.72 0.91697
Target:  5'- cGGCGC-Cug-----GGCGCCGGCACg -3'
miRNA:   3'- -CCGCGcGuaaaaaaCCGCGGUUGUGg -5'
8644 5' -50.1 NC_002229.2 + 139736 0.72 0.910913
Target:  5'- uGGCGCG-AUUUUgaaaacGGCGCagaaaaAGCGCCa -3'
miRNA:   3'- -CCGCGCgUAAAAaa----CCGCGg-----UUGUGG- -5'
8644 5' -50.1 NC_002229.2 + 110120 0.78 0.640194
Target:  5'- aGGCGCGCucgcccUUUGGCGUCAAgAUCc -3'
miRNA:   3'- -CCGCGCGuaaa--AAACCGCGGUUgUGG- -5'
8644 5' -50.1 NC_002229.2 + 173100 0.82 0.475752
Target:  5'- uGCGCGcCAUUgUUUGGCGCUuuucuGCGCCg -3'
miRNA:   3'- cCGCGC-GUAAaAAACCGCGGu----UGUGG- -5'
8644 5' -50.1 NC_002229.2 + 139695 0.83 0.428481
Target:  5'- uGGCGCGCaAUUUUUUGGCGCCuuuUugUn -3'
miRNA:   3'- -CCGCGCG-UAAAAAACCGCGGuu-GugG- -5'
8644 5' -50.1 NC_002229.2 + 139666 1.16 0.004494
Target:  5'- uGGCGCGCAUUUUUUGGCGCCAACACCa -3'
miRNA:   3'- -CCGCGCGUAAAAAACCGCGGUUGUGG- -5'
8644 5' -50.1 NC_002229.2 + 80160 0.7 0.961583
Target:  5'- uGGCGCGUAUgugcauacCGCCGACAgCa -3'
miRNA:   3'- -CCGCGCGUAaaaaacc-GCGGUUGUgG- -5'
8644 5' -50.1 NC_002229.2 + 137923 0.7 0.963697
Target:  5'- cGGUcccuGCGCAgg---UGGUGCCcgcugGGCGCCg -3'
miRNA:   3'- -CCG----CGCGUaaaaaACCGCGG-----UUGUGG- -5'
8644 5' -50.1 NC_002229.2 + 712 0.69 0.980532
Target:  5'- cGGCG-GCAauggcgGGUGCCGGCcgACCg -3'
miRNA:   3'- -CCGCgCGUaaaaaaCCGCGGUUG--UGG- -5'
8644 5' -50.1 NC_002229.2 + 173142 0.66 0.998365
Target:  5'- uGGCGC-CAaaaaaUGcGCGCCAacaaaaagGCGCCa -3'
miRNA:   3'- -CCGCGcGUaaaaaAC-CGCGGU--------UGUGG- -5'
8644 5' -50.1 NC_002229.2 + 872 0.66 0.997225
Target:  5'- gGGcCGCGCGUg---UGGgaGC-GACGCCg -3'
miRNA:   3'- -CC-GCGCGUAaaaaACCg-CGgUUGUGG- -5'
8644 5' -50.1 NC_002229.2 + 138524 0.66 0.997225
Target:  5'- aGGCGCGCGgug---GGCGUaGGCGg- -3'
miRNA:   3'- -CCGCGCGUaaaaaaCCGCGgUUGUgg -5'
8644 5' -50.1 NC_002229.2 + 137865 0.67 0.995489
Target:  5'- cGGcCGUGCc------GGCGCCcaGGCGCCg -3'
miRNA:   3'- -CC-GCGCGuaaaaaaCCGCGG--UUGUGG- -5'
8644 5' -50.1 NC_002229.2 + 136027 0.67 0.994745
Target:  5'- uGCGCGuCAUgcauaacUGGCGCaugcgugAACGCCu -3'
miRNA:   3'- cCGCGC-GUAaaaa---ACCGCGg------UUGUGG- -5'
8644 5' -50.1 NC_002229.2 + 126258 0.67 0.993903
Target:  5'- gGGcCGCGCAgg----GGuCGCCGACGa- -3'
miRNA:   3'- -CC-GCGCGUaaaaaaCC-GCGGUUGUgg -5'
8644 5' -50.1 NC_002229.2 + 138012 0.68 0.991897
Target:  5'- cGCGCGCAcgaccgUUGGaGCCGuugaGCCg -3'
miRNA:   3'- cCGCGCGUaaaa--AACCgCGGUug--UGG- -5'
8644 5' -50.1 NC_002229.2 + 163380 0.68 0.987944
Target:  5'- cGCGCGCuua---UGGauacuacgaGCUAGCACCg -3'
miRNA:   3'- cCGCGCGuaaaaaACCg--------CGGUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.