miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8647 5' -55.3 NC_002229.2 + 143438 1.01 0.012645
Target:  5'- cGGCCCAGUACAGCCUGCGGCAaauGGGc -3'
miRNA:   3'- -CCGGGUCAUGUCGGACGCCGUau-UCC- -5'
8647 5' -55.3 NC_002229.2 + 169176 1.01 0.012645
Target:  5'- cGGCCCAGUACAGCCUGCGGCAaauGGGc -3'
miRNA:   3'- -CCGGGUCAUGUCGGACGCCGUau-UCC- -5'
8647 5' -55.3 NC_002229.2 + 693 0.72 0.669548
Target:  5'- cGGCCgAccGCGGCCUGCGGgc-GAGGa -3'
miRNA:   3'- -CCGGgUcaUGUCGGACGCCguaUUCC- -5'
8647 5' -55.3 NC_002229.2 + 138018 0.72 0.669548
Target:  5'- cGGCCgAccGCGGCCUGCGGgc-GAGGa -3'
miRNA:   3'- -CCGGgUcaUGUCGGACGCCguaUUCC- -5'
8647 5' -55.3 NC_002229.2 + 2155 0.71 0.699823
Target:  5'- uGGCau-GUGCAGCaaugGUGGUAUAAGGa -3'
miRNA:   3'- -CCGgguCAUGUCGga--CGCCGUAUUCC- -5'
8647 5' -55.3 NC_002229.2 + 136557 0.71 0.699823
Target:  5'- uGGCau-GUGCAGCaaugGUGGUAUAAGGa -3'
miRNA:   3'- -CCGgguCAUGUCGga--CGCCGUAUUCC- -5'
8647 5' -55.3 NC_002229.2 + 17441 0.68 0.854624
Target:  5'- cGGCCacgAGUuaGGCCUG-GGCGUAGGa -3'
miRNA:   3'- -CCGGg--UCAugUCGGACgCCGUAUUCc -5'
8647 5' -55.3 NC_002229.2 + 167640 0.67 0.903838
Target:  5'- cGGCUCGaagaauCAGCCcGCGGUcUGGGGg -3'
miRNA:   3'- -CCGGGUcau---GUCGGaCGCCGuAUUCC- -5'
8647 5' -55.3 NC_002229.2 + 144974 0.67 0.903838
Target:  5'- cGGCUCGaagaauCAGCCcGCGGUcUGGGGg -3'
miRNA:   3'- -CCGGGUcau---GUCGGaCGCCGuAUUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.