miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8648 3' -57.1 NC_002229.2 + 148837 0.66 0.879903
Target:  5'- uACCGCAcuuugcaauuGGgGGGgGggGGGGGGGGAuCGa -3'
miRNA:   3'- -UGGCGU----------UUgUCCgCa-CCCUCUCCU-GC- -5'
8648 3' -57.1 NC_002229.2 + 163777 0.66 0.879903
Target:  5'- uACCGCAcuuugcaauuGGgGGGgGggGGGGGGGGAuCGa -3'
miRNA:   3'- -UGGCGU----------UUgUCCgCa-CCCUCUCCU-GC- -5'
8648 3' -57.1 NC_002229.2 + 5732 0.66 0.872835
Target:  5'- -aCGgAGACGGGgG-GGGGGGGGAa- -3'
miRNA:   3'- ugGCgUUUGUCCgCaCCCUCUCCUgc -5'
8648 3' -57.1 NC_002229.2 + 132979 0.66 0.872835
Target:  5'- -aCGgAGACGGGgG-GGGGGGGGAa- -3'
miRNA:   3'- ugGCgUUUGUCCgCaCCCUCUCCUgc -5'
8648 3' -57.1 NC_002229.2 + 142343 0.67 0.86556
Target:  5'- -aCGCaAAACAGGUGUucgccuGGGAGGGG-UGa -3'
miRNA:   3'- ugGCG-UUUGUCCGCA------CCCUCUCCuGC- -5'
8648 3' -57.1 NC_002229.2 + 145964 0.67 0.86556
Target:  5'- gGCCGCAAugccuaAGGCGgucGGGAauaguAGGACa -3'
miRNA:   3'- -UGGCGUUug----UCCGCa--CCCUc----UCCUGc -5'
8648 3' -57.1 NC_002229.2 + 170271 0.67 0.86556
Target:  5'- -aCGCaAAACAGGUGUucgccuGGGAGGGG-UGa -3'
miRNA:   3'- ugGCG-UUUGUCCGCA------CCCUCUCCuGC- -5'
8648 3' -57.1 NC_002229.2 + 166650 0.67 0.86556
Target:  5'- gGCCGCAAugccuaAGGCGgucGGGAauaguAGGACa -3'
miRNA:   3'- -UGGCGUUug----UCCGCa--CCCUc----UCCUGc -5'
8648 3' -57.1 NC_002229.2 + 688 0.68 0.800573
Target:  5'- gACCGCGGccuGCGGGCGaggaccccaGGGcggauGGGGGCGa -3'
miRNA:   3'- -UGGCGUU---UGUCCGCa--------CCCu----CUCCUGC- -5'
8648 3' -57.1 NC_002229.2 + 138023 0.68 0.800573
Target:  5'- gACCGCGGccuGCGGGCGaggaccccaGGGcggauGGGGGCGa -3'
miRNA:   3'- -UGGCGUU---UGUCCGCa--------CCCu----CUCCUGC- -5'
8648 3' -57.1 NC_002229.2 + 831 0.69 0.773566
Target:  5'- -gCGCAGGgGGGCGcGGGGGuugccccgGGGGCGc -3'
miRNA:   3'- ugGCGUUUgUCCGCaCCCUC--------UCCUGC- -5'
8648 3' -57.1 NC_002229.2 + 137880 0.69 0.773566
Target:  5'- -gCGCAGGgGGGCGcGGGGGuugccccgGGGGCGc -3'
miRNA:   3'- ugGCGUUUgUCCGCaCCCUC--------UCCUGC- -5'
8648 3' -57.1 NC_002229.2 + 164639 0.69 0.745461
Target:  5'- uAUCGCAGACugcucGGGUGgcugcGGGAGGGGcaGCGg -3'
miRNA:   3'- -UGGCGUUUG-----UCCGCa----CCCUCUCC--UGC- -5'
8648 3' -57.1 NC_002229.2 + 147975 0.69 0.745461
Target:  5'- uAUCGCAGACugcucGGGUGgcugcGGGAGGGGcaGCGg -3'
miRNA:   3'- -UGGCGUUUG-----UCCGCa----CCCUCUCC--UGC- -5'
8648 3' -57.1 NC_002229.2 + 105743 0.69 0.72623
Target:  5'- cGCCGUGAgccacaACGGGCGaauugacguaGGGaAGAGGGCGg -3'
miRNA:   3'- -UGGCGUU------UGUCCGCa---------CCC-UCUCCUGC- -5'
8648 3' -57.1 NC_002229.2 + 138334 0.69 0.72623
Target:  5'- cGCCGCGGGgGGGa--GGGGGuGGGGCGg -3'
miRNA:   3'- -UGGCGUUUgUCCgcaCCCUC-UCCUGC- -5'
8648 3' -57.1 NC_002229.2 + 377 0.69 0.72623
Target:  5'- cGCCGCGGGgGGGa--GGGGGuGGGGCGg -3'
miRNA:   3'- -UGGCGUUUgUCCgcaCCCUC-UCCUGC- -5'
8648 3' -57.1 NC_002229.2 + 150915 0.71 0.656906
Target:  5'- cUCGCAuAUGGGgGUGGGAcacAGGACGa -3'
miRNA:   3'- uGGCGUuUGUCCgCACCCUc--UCCUGC- -5'
8648 3' -57.1 NC_002229.2 + 145033 0.95 0.021771
Target:  5'- aACCGCAAACAGGCGUGGaGGAGGACGc -3'
miRNA:   3'- -UGGCGUUUGUCCGCACCcUCUCCUGC- -5'
8648 3' -57.1 NC_002229.2 + 167582 0.95 0.021771
Target:  5'- aACCGCAAACAGGCGUGGaGGAGGACGc -3'
miRNA:   3'- -UGGCGUUUGUCCGCACCcUCUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.