miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8648 5' -60.5 NC_002229.2 + 489 0.66 0.797903
Target:  5'- uGGgGUCCUCgCCcgcAGGcCgCGGUCG-GCCg -3'
miRNA:   3'- -CCgCAGGAG-GG---UUCaG-GCCGGCuCGG- -5'
8648 5' -60.5 NC_002229.2 + 143940 0.66 0.789293
Target:  5'- --aGUUCUUCCAagGGUCUGGCUGcGUCg -3'
miRNA:   3'- ccgCAGGAGGGU--UCAGGCCGGCuCGG- -5'
8648 5' -60.5 NC_002229.2 + 674 0.66 0.762726
Target:  5'- cGGCGUCgCUCCCAcacgCgCGGCCccGCg -3'
miRNA:   3'- -CCGCAG-GAGGGUuca-G-GCCGGcuCGg -5'
8648 5' -60.5 NC_002229.2 + 147705 0.68 0.66857
Target:  5'- uGGUGUCCUCaCCAAaaUCGGCU--GCCa -3'
miRNA:   3'- -CCGCAGGAG-GGUUcaGGCCGGcuCGG- -5'
8648 5' -60.5 NC_002229.2 + 167616 1.13 0.000789
Target:  5'- gGGCGUCCUCCCAAGUCCGGCCGAGCCg -3'
miRNA:   3'- -CCGCAGGAGGGUUCAGGCCGGCUCGG- -5'
8648 5' -60.5 NC_002229.2 + 144999 1.13 0.000789
Target:  5'- gGGCGUCCUCCCAAGUCCGGCCGAGCCg -3'
miRNA:   3'- -CCGCAGGAGGGUUCAGGCCGGCUCGG- -5'
8648 5' -60.5 NC_002229.2 + 164909 0.68 0.66857
Target:  5'- uGGUGUCCUCaCCAAaaUCGGCU--GCCa -3'
miRNA:   3'- -CCGCAGGAG-GGUUcaGGCCGGcuCGG- -5'
8648 5' -60.5 NC_002229.2 + 138038 0.66 0.762726
Target:  5'- cGGCGUCgCUCCCAcacgCgCGGCCccGCg -3'
miRNA:   3'- -CCGCAG-GAGGGUuca-G-GCCGGcuCGg -5'
8648 5' -60.5 NC_002229.2 + 78853 0.66 0.762726
Target:  5'- cGGCuUCCaagCCCAc-UCCGGCCcccaAGCCu -3'
miRNA:   3'- -CCGcAGGa--GGGUucAGGCCGGc---UCGG- -5'
8648 5' -60.5 NC_002229.2 + 168674 0.66 0.789293
Target:  5'- --aGUUCUUCCAagGGUCUGGCUGcGUCg -3'
miRNA:   3'- ccgCAGGAGGGU--UCAGGCCGGCuCGG- -5'
8648 5' -60.5 NC_002229.2 + 138222 0.66 0.797903
Target:  5'- uGGgGUCCUCgCCcgcAGGcCgCGGUCG-GCCg -3'
miRNA:   3'- -CCgCAGGAG-GG---UUCaG-GCCGGCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.