Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8650 | 5' | -46.1 | NC_002229.2 | + | 126284 | 0.71 | 0.996358 |
Target: 5'- gCUCCCCAGGGuGGAAAAGGGGCgGa- -3' miRNA: 3'- gGGGGGGUUUU-UUUUUUCCUUGgCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 39365 | 0.74 | 0.982819 |
Target: 5'- aCCCCCCCGuuuAGAAuuauGGGAACgGg- -3' miRNA: 3'- -GGGGGGGUuuuUUUUu---UCCUUGgCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 47848 | 0.75 | 0.970056 |
Target: 5'- gCgCCCCAGAucugauguacauGAGAGAAGGAACUGUu -3' miRNA: 3'- gGgGGGGUUU------------UUUUUUUCCUUGGCAc -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 55727 | 0.75 | 0.970056 |
Target: 5'- gCUCCCCCAuggcccaucGAGuucuGGAAGGAACCGg- -3' miRNA: 3'- -GGGGGGGU---------UUUuu--UUUUCCUUGGCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 152486 | 0.75 | 0.963415 |
Target: 5'- cCCCCCCCAuccau-GAAGGGG-CGUGu -3' miRNA: 3'- -GGGGGGGUuuuuuuUUUCCUUgGCAC- -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 128980 | 0.76 | 0.950326 |
Target: 5'- gCCCCCCCAGAAAGAauaaucacugcuucGAAcGGAGCuCGa- -3' miRNA: 3'- -GGGGGGGUUUUUUU--------------UUU-CCUUG-GCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 9732 | 0.76 | 0.950326 |
Target: 5'- gCCCCCCCAGAAAGAauaaucacugcuucGAAcGGAGCuCGa- -3' miRNA: 3'- -GGGGGGGUUUUUUU--------------UUU-CCUUG-GCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 45444 | 0.76 | 0.947194 |
Target: 5'- -gCCUCUAGAGAAAGAGGGGACCa-- -3' miRNA: 3'- ggGGGGGUUUUUUUUUUCCUUGGcac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 165494 | 0.77 | 0.932313 |
Target: 5'- gCCCCCCGAGuac--GGGGGGCCGg- -3' miRNA: 3'- gGGGGGGUUUuuuuuUUCCUUGGCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 147121 | 0.77 | 0.932313 |
Target: 5'- gCCCCCCGAGuac--GGGGGGCCGg- -3' miRNA: 3'- gGGGGGGUUUuuuuuUUCCUUGGCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 165561 | 0.77 | 0.915038 |
Target: 5'- cUCCCCCCAGAGAAGAAGucGAACUGa- -3' miRNA: 3'- -GGGGGGGUUUUUUUUUUc-CUUGGCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 147054 | 0.77 | 0.915038 |
Target: 5'- cUCCCCCCAGAGAAGAAGucGAACUGa- -3' miRNA: 3'- -GGGGGGGUUUUUUUUUUc-CUUGGCac -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 150468 | 1.11 | 0.024115 |
Target: 5'- cCCCCCCCAAAAAAAAAAGGAACCGUGc -3' miRNA: 3'- -GGGGGGGUUUUUUUUUUCCUUGGCAC- -5' |
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8650 | 5' | -46.1 | NC_002229.2 | + | 162146 | 1.11 | 0.024115 |
Target: 5'- cCCCCCCCAAAAAAAAAAGGAACCGUGc -3' miRNA: 3'- -GGGGGGGUUUUUUUUUUCCUUGGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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