miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8656 5' -49.9 NC_002229.2 + 172791 0.97 0.060468
Target:  5'- cCGAAGCAUGGAAACGUCCUGG-GAAAa -3'
miRNA:   3'- -GCUUCGUACCUUUGCAGGACCuCUUU- -5'
8656 5' -49.9 NC_002229.2 + 166787 0.72 0.911933
Target:  5'- uGGAG-AUGGAAGCGagUCUGGAGAAc -3'
miRNA:   3'- gCUUCgUACCUUUGCa-GGACCUCUUu -5'
8656 5' -49.9 NC_002229.2 + 166022 0.69 0.979106
Target:  5'- cCGAgAGuCAUGaGAACGUCCUGGGGu-- -3'
miRNA:   3'- -GCU-UC-GUACcUUUGCAGGACCUCuuu -5'
8656 5' -49.9 NC_002229.2 + 165432 0.72 0.911933
Target:  5'- gGAAugcGCAggcGGAGACGgagCCUGGGGAGGg -3'
miRNA:   3'- gCUU---CGUa--CCUUUGCa--GGACCUCUUU- -5'
8656 5' -49.9 NC_002229.2 + 165306 0.74 0.828773
Target:  5'- gGggGCAggugaggGGAGGCGUgCUGGGGGc- -3'
miRNA:   3'- gCuuCGUa------CCUUUGCAgGACCUCUuu -5'
8656 5' -49.9 NC_002229.2 + 147308 0.74 0.828773
Target:  5'- gGggGCAggugaggGGAGGCGUgCUGGGGGc- -3'
miRNA:   3'- gCuuCGUa------CCUUUGCAgGACCUCUuu -5'
8656 5' -49.9 NC_002229.2 + 147182 0.72 0.911933
Target:  5'- gGAAugcGCAggcGGAGACGgagCCUGGGGAGGg -3'
miRNA:   3'- gCUU---CGUa--CCUUUGCa--GGACCUCUUU- -5'
8656 5' -49.9 NC_002229.2 + 146592 0.69 0.979106
Target:  5'- cCGAgAGuCAUGaGAACGUCCUGGGGu-- -3'
miRNA:   3'- -GCU-UC-GUACcUUUGCAGGACCUCuuu -5'
8656 5' -49.9 NC_002229.2 + 145827 0.72 0.911933
Target:  5'- uGGAG-AUGGAAGCGagUCUGGAGAAc -3'
miRNA:   3'- gCUUCgUACCUUUGCa-GGACCUCUUu -5'
8656 5' -49.9 NC_002229.2 + 139823 0.97 0.060468
Target:  5'- cCGAAGCAUGGAAACGUCCUGG-GAAAa -3'
miRNA:   3'- -GCUUCGUACCUUUGCAGGACCuCUUU- -5'
8656 5' -49.9 NC_002229.2 + 128338 0.74 0.845938
Target:  5'- gGAAGCGcGGGGACGUUgaUGGAGGAGu -3'
miRNA:   3'- gCUUCGUaCCUUUGCAGg-ACCUCUUU- -5'
8656 5' -49.9 NC_002229.2 + 69185 0.74 0.845938
Target:  5'- aGAAGCGUGGAucaaaGUCUgcggGGAGGAAu -3'
miRNA:   3'- gCUUCGUACCUuug--CAGGa---CCUCUUU- -5'
8656 5' -49.9 NC_002229.2 + 10374 0.74 0.845938
Target:  5'- gGAAGCGcGGGGACGUUgaUGGAGGAGu -3'
miRNA:   3'- gCUUCGUaCCUUUGCAGg-ACCUCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.