miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8658 3' -50.4 NC_002229.2 + 68306 0.69 0.973227
Target:  5'- gCGUCGCauauauAUAGCUAuCGGUccGCcGCa -3'
miRNA:   3'- -GCGGCGgu----UAUCGAU-GCCGunUGuCG- -5'
8658 3' -50.4 NC_002229.2 + 817 0.69 0.973227
Target:  5'- gCGCCGCUcggGGCUAcCGGgGuccguccGCGGCc -3'
miRNA:   3'- -GCGGCGGuuaUCGAU-GCCgUn------UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 137895 0.69 0.973227
Target:  5'- gCGCCGCUcggGGCUAcCGGgGuccguccGCGGCc -3'
miRNA:   3'- -GCGGCGGuuaUCGAU-GCCgUn------UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 148046 0.69 0.967207
Target:  5'- gGCCGaCCGGagcgugGGCUAUGG---GCAGCg -3'
miRNA:   3'- gCGGC-GGUUa-----UCGAUGCCgunUGUCG- -5'
8658 3' -50.4 NC_002229.2 + 164568 0.69 0.967207
Target:  5'- gGCCGaCCGGagcgugGGCUAUGG---GCAGCg -3'
miRNA:   3'- gCGGC-GGUUa-----UCGAUGCCgunUGUCG- -5'
8658 3' -50.4 NC_002229.2 + 63628 0.7 0.963862
Target:  5'- uGCaGCCGAUAGaUUACuuuuagggGGUAggGCAGCg -3'
miRNA:   3'- gCGgCGGUUAUC-GAUG--------CCGUn-UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 7831 0.7 0.952418
Target:  5'- uGCCGCCAGcUAGUUGagaaGCGcACAGa -3'
miRNA:   3'- gCGGCGGUU-AUCGAUgc--CGUnUGUCg -5'
8658 3' -50.4 NC_002229.2 + 91772 0.7 0.952418
Target:  5'- -aCCGCgAucGUAGgUugGGUAuuGCAGCc -3'
miRNA:   3'- gcGGCGgU--UAUCgAugCCGUn-UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 130881 0.7 0.952418
Target:  5'- uGCCGCCAGcUAGUUGagaaGCGcACAGa -3'
miRNA:   3'- gCGGCGGUU-AUCGAUgc--CGUnUGUCg -5'
8658 3' -50.4 NC_002229.2 + 137667 0.7 0.948117
Target:  5'- uCGgCGCCug-GGCgcCGGCAcgGCcGCg -3'
miRNA:   3'- -GCgGCGGuuaUCGauGCCGUn-UGuCG- -5'
8658 3' -50.4 NC_002229.2 + 14175 0.7 0.948117
Target:  5'- cCGCCggGCCAAcAGg-AUGGCAucgGCAGCu -3'
miRNA:   3'- -GCGG--CGGUUaUCgaUGCCGUn--UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 18462 0.71 0.943566
Target:  5'- gGCUGCCAgagGUGGUU-CGGCGcAUcGCu -3'
miRNA:   3'- gCGGCGGU---UAUCGAuGCCGUnUGuCG- -5'
8658 3' -50.4 NC_002229.2 + 148249 0.71 0.93677
Target:  5'- cCGCUGCCcAUAGCccacgcuccgguCGGCcuggACAGCa -3'
miRNA:   3'- -GCGGCGGuUAUCGau----------GCCGun--UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 164365 0.71 0.93677
Target:  5'- cCGCUGCCcAUAGCccacgcuccgguCGGCcuggACAGCa -3'
miRNA:   3'- -GCGGCGGuUAUCGau----------GCCGun--UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 137708 0.72 0.891143
Target:  5'- aCGUgGCCcuggGGCUugGGCugagcGCAGUg -3'
miRNA:   3'- -GCGgCGGuua-UCGAugCCGun---UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 144487 0.72 0.891143
Target:  5'- aGCCGCgAguAUAGCUAUGaCAcGCAGg -3'
miRNA:   3'- gCGGCGgU--UAUCGAUGCcGUnUGUCg -5'
8658 3' -50.4 NC_002229.2 + 168127 0.72 0.891143
Target:  5'- aGCCGCgAguAUAGCUAUGaCAcGCAGg -3'
miRNA:   3'- gCGGCGgU--UAUCGAUGCcGUnUGUCg -5'
8658 3' -50.4 NC_002229.2 + 1003 0.72 0.891143
Target:  5'- aCGUgGCCcuggGGCUugGGCugagcGCAGUg -3'
miRNA:   3'- -GCGgCGGuua-UCGAugCCGun---UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 166949 0.73 0.884061
Target:  5'- uGCUGCCGuaacauUAGCagcccgACGGCGguuccaGCAGCu -3'
miRNA:   3'- gCGGCGGUu-----AUCGa-----UGCCGUn-----UGUCG- -5'
8658 3' -50.4 NC_002229.2 + 145665 0.73 0.884061
Target:  5'- uGCUGCCGuaacauUAGCagcccgACGGCGguuccaGCAGCu -3'
miRNA:   3'- gCGGCGGUu-----AUCGa-----UGCCGUn-----UGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.