miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
866 3' -63 NC_000898.1 + 8252 0.66 0.584265
Target:  5'- gUGCGUGuCUGCGUGUCugcgugugcacgcgUCUGUGGGAg -3'
miRNA:   3'- uGCGCGCcGGCGCGCGG--------------AGAUACCCU- -5'
866 3' -63 NC_000898.1 + 161419 0.66 0.584265
Target:  5'- gUGCGUGuCUGCGUGUCugcgugugcacgcgUCUGUGGGAg -3'
miRNA:   3'- uGCGCGCcGGCGCGCGG--------------AGAUACCCU- -5'
866 3' -63 NC_000898.1 + 3384 0.66 0.577502
Target:  5'- -gGCGgaGGCgGUGCGCCag-GUGGGGg -3'
miRNA:   3'- ugCGCg-CCGgCGCGCGGagaUACCCU- -5'
866 3' -63 NC_000898.1 + 8989 0.66 0.577502
Target:  5'- cACGCGCGGaCCacuCGgGCCggUcgGGGAg -3'
miRNA:   3'- -UGCGCGCC-GGc--GCgCGGagAuaCCCU- -5'
866 3' -63 NC_000898.1 + 156551 0.66 0.577502
Target:  5'- -gGCGgaGGCgGUGCGCCag-GUGGGGg -3'
miRNA:   3'- ugCGCg-CCGgCGCGCGGagaUACCCU- -5'
866 3' -63 NC_000898.1 + 162057 0.67 0.520439
Target:  5'- gGCGCGCG--CGCGCGCgUUgg-GGGAu -3'
miRNA:   3'- -UGCGCGCcgGCGCGCGgAGauaCCCU- -5'
866 3' -63 NC_000898.1 + 8889 0.67 0.520439
Target:  5'- gGCGCGCG--CGCGCGCgUUgg-GGGAu -3'
miRNA:   3'- -UGCGCGCcgGCGCGCGgAGauaCCCU- -5'
866 3' -63 NC_000898.1 + 3918 0.68 0.465714
Target:  5'- cCGCuGUGGUCGC-CGCCUCUGcGGaGAg -3'
miRNA:   3'- uGCG-CGCCGGCGcGCGGAGAUaCC-CU- -5'
866 3' -63 NC_000898.1 + 157086 0.68 0.465714
Target:  5'- cCGCuGUGGUCGC-CGCCUCUGcGGaGAg -3'
miRNA:   3'- uGCG-CGCCGGCGcGCGGAGAUaCC-CU- -5'
866 3' -63 NC_000898.1 + 4751 0.71 0.336455
Target:  5'- aACGgGCGaauccGCCGCGUGCCgcaUCUccGGGAa -3'
miRNA:   3'- -UGCgCGC-----CGGCGCGCGG---AGAuaCCCU- -5'
866 3' -63 NC_000898.1 + 157919 0.71 0.336455
Target:  5'- aACGgGCGaauccGCCGCGUGCCgcaUCUccGGGAa -3'
miRNA:   3'- -UGCgCGC-----CGGCGCGCGG---AGAuaCCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.