miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8664 3' -48.9 NC_002229.2 + 127100 0.66 0.999051
Target:  5'- aUUCaGCUCgUUCGUcgccuaGCGUAGCGUU-CCu -3'
miRNA:   3'- -AAG-CGAGaAAGUA------CGCGUCGUAAuGG- -5'
8664 3' -48.9 NC_002229.2 + 11613 0.66 0.999051
Target:  5'- aUUCaGCUCgUUCGUcgccuaGCGUAGCGUU-CCu -3'
miRNA:   3'- -AAG-CGAGaAAGUA------CGCGUCGUAAuGG- -5'
8664 3' -48.9 NC_002229.2 + 100062 0.66 0.998585
Target:  5'- aUgGCUUcUUCAUGCGUuGCAUUGa- -3'
miRNA:   3'- aAgCGAGaAAGUACGCGuCGUAAUgg -5'
8664 3' -48.9 NC_002229.2 + 125164 0.67 0.996521
Target:  5'- aUCGagaCUUUCGUGCuGCAGCugu-CCa -3'
miRNA:   3'- aAGCga-GAAAGUACG-CGUCGuaauGG- -5'
8664 3' -48.9 NC_002229.2 + 169899 0.67 0.995898
Target:  5'- aUCGCUC----GUGuCGCAaauGCGUUACCu -3'
miRNA:   3'- aAGCGAGaaagUAC-GCGU---CGUAAUGG- -5'
8664 3' -48.9 NC_002229.2 + 142715 0.67 0.995898
Target:  5'- aUCGCUC----GUGuCGCAaauGCGUUACCu -3'
miRNA:   3'- aAGCGAGaaagUAC-GCGU---CGUAAUGG- -5'
8664 3' -48.9 NC_002229.2 + 151988 0.68 0.99438
Target:  5'- gUCGCUCggUUAUGUGCGGa--UACa -3'
miRNA:   3'- aAGCGAGaaAGUACGCGUCguaAUGg -5'
8664 3' -48.9 NC_002229.2 + 894 0.68 0.991282
Target:  5'- --gGCUCcaacggUCGUGCGC-GCGggGCCg -3'
miRNA:   3'- aagCGAGaa----AGUACGCGuCGUaaUGG- -5'
8664 3' -48.9 NC_002229.2 + 137817 0.68 0.991282
Target:  5'- --gGCUCcaacggUCGUGCGC-GCGggGCCg -3'
miRNA:   3'- aagCGAGaa----AGUACGCGuCGUaaUGG- -5'
8664 3' -48.9 NC_002229.2 + 2164 0.72 0.933275
Target:  5'- uUUCGuCUCUggCAUGUGCAGCAa---- -3'
miRNA:   3'- -AAGC-GAGAaaGUACGCGUCGUaaugg -5'
8664 3' -48.9 NC_002229.2 + 136548 0.72 0.933275
Target:  5'- uUUCGuCUCUggCAUGUGCAGCAa---- -3'
miRNA:   3'- -AAGC-GAGAaaGUACGCGUCGUaaugg -5'
8664 3' -48.9 NC_002229.2 + 3454 0.73 0.909805
Target:  5'- uUUUGCUUgUUCAcUGUGCGGCAUUAUUa -3'
miRNA:   3'- -AAGCGAGaAAGU-ACGCGUCGUAAUGG- -5'
8664 3' -48.9 NC_002229.2 + 135257 0.73 0.909805
Target:  5'- uUUUGCUUgUUCAcUGUGCGGCAUUAUUa -3'
miRNA:   3'- -AAGCGAGaAAGU-ACGCGUCGUAAUGG- -5'
8664 3' -48.9 NC_002229.2 + 2973 0.74 0.882103
Target:  5'- gUUCaCUCUUUCAcGCGCGGCA-UAUCg -3'
miRNA:   3'- -AAGcGAGAAAGUaCGCGUCGUaAUGG- -5'
8664 3' -48.9 NC_002229.2 + 135739 0.76 0.79641
Target:  5'- gUUCaCUCUUUCAcGCGCGGCAcUAUCg -3'
miRNA:   3'- -AAGcGAGAAAGUaCGCGUCGUaAUGG- -5'
8664 3' -48.9 NC_002229.2 + 135495 1.12 0.009063
Target:  5'- gUUCGCUCUUUCAUGCGCAGCAUUACCg -3'
miRNA:   3'- -AAGCGAGAAAGUACGCGUCGUAAUGG- -5'
8664 3' -48.9 NC_002229.2 + 3216 1.12 0.009063
Target:  5'- gUUCGCUCUUUCAUGCGCAGCAUUACCg -3'
miRNA:   3'- -AAGCGAGAAAGUACGCGUCGUAAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.