miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8664 5' -45 NC_002229.2 + 3120 0.66 0.999998
Target:  5'- ----cGGUGCCgGUACGG-GGgGAAGCu -3'
miRNA:   3'- cauuaUUACGG-CGUGUCaCUgUUUCG- -5'
8664 5' -45 NC_002229.2 + 75568 0.66 0.999998
Target:  5'- -aAAUAGUcGCCGUGCGG-GAUuaauAGCg -3'
miRNA:   3'- caUUAUUA-CGGCGUGUCaCUGuu--UCG- -5'
8664 5' -45 NC_002229.2 + 135592 0.66 0.999998
Target:  5'- ----cGGUGCCgGUACGG-GGgGAAGCu -3'
miRNA:   3'- cauuaUUACGG-CGUGUCaCUgUUUCG- -5'
8664 5' -45 NC_002229.2 + 91705 0.66 0.999997
Target:  5'- cUGAUAGUGCCaCAUGG-GGCAAAuGUa -3'
miRNA:   3'- cAUUAUUACGGcGUGUCaCUGUUU-CG- -5'
8664 5' -45 NC_002229.2 + 82286 0.67 0.999988
Target:  5'- ----aAGUGCCGCAUuagAG-GACuuGGCc -3'
miRNA:   3'- cauuaUUACGGCGUG---UCaCUGuuUCG- -5'
8664 5' -45 NC_002229.2 + 82775 0.67 0.999983
Target:  5'- ----aGAUGCCGC-CAG-GACAGguGGUu -3'
miRNA:   3'- cauuaUUACGGCGuGUCaCUGUU--UCG- -5'
8664 5' -45 NC_002229.2 + 53564 0.67 0.999983
Target:  5'- -cAAUAuUGCCGCAUcauuGUGAUGuGGGCa -3'
miRNA:   3'- caUUAUuACGGCGUGu---CACUGU-UUCG- -5'
8664 5' -45 NC_002229.2 + 969 0.68 0.999956
Target:  5'- --cGUGuggGCCGUGCAG-GGCAuGAGCg -3'
miRNA:   3'- cauUAUua-CGGCGUGUCaCUGU-UUCG- -5'
8664 5' -45 NC_002229.2 + 137743 0.68 0.999956
Target:  5'- --cGUGuggGCCGUGCAG-GGCAuGAGCg -3'
miRNA:   3'- cauUAUua-CGGCGUGUCaCUGU-UUCG- -5'
8664 5' -45 NC_002229.2 + 14730 0.68 0.99994
Target:  5'- gGUAcgAGcUGCCGUACA---ACAGAGCa -3'
miRNA:   3'- -CAUuaUU-ACGGCGUGUcacUGUUUCG- -5'
8664 5' -45 NC_002229.2 + 80066 0.69 0.999819
Target:  5'- uGUAGUGAcgGCC-CGCGGUGAUcuuGCa -3'
miRNA:   3'- -CAUUAUUa-CGGcGUGUCACUGuuuCG- -5'
8664 5' -45 NC_002229.2 + 117690 0.7 0.999519
Target:  5'- ----aAcgGCCGCACGGUacaGGCAAucGCa -3'
miRNA:   3'- cauuaUuaCGGCGUGUCA---CUGUUu-CG- -5'
8664 5' -45 NC_002229.2 + 871 0.74 0.986539
Target:  5'- -------gGCCGCGC-GUGugGGAGCg -3'
miRNA:   3'- cauuauuaCGGCGUGuCACugUUUCG- -5'
8664 5' -45 NC_002229.2 + 137840 0.74 0.986539
Target:  5'- -------gGCCGCGC-GUGugGGAGCg -3'
miRNA:   3'- cauuauuaCGGCGUGuCACugUUUCG- -5'
8664 5' -45 NC_002229.2 + 3417 0.75 0.980463
Target:  5'- -cGGUAAUGCUGCGCA-UGAaAGAGCg -3'
miRNA:   3'- caUUAUUACGGCGUGUcACUgUUUCG- -5'
8664 5' -45 NC_002229.2 + 135295 0.75 0.980463
Target:  5'- -cGGUAAUGCUGCGCA-UGAaAGAGCg -3'
miRNA:   3'- caUUAUUACGGCGUGUcACUgUUUCG- -5'
8664 5' -45 NC_002229.2 + 12455 0.75 0.975403
Target:  5'- -------gGCCGCGCAGgggucgccGACGAGGCa -3'
miRNA:   3'- cauuauuaCGGCGUGUCa-------CUGUUUCG- -5'
8664 5' -45 NC_002229.2 + 126257 0.75 0.975403
Target:  5'- -------gGCCGCGCAGgggucgccGACGAGGCa -3'
miRNA:   3'- cauuauuaCGGCGUGUCa-------CUGUUUCG- -5'
8664 5' -45 NC_002229.2 + 135539 0.8 0.868325
Target:  5'- -cGAUAGUGCCGCGC-GUGAaAGAGUg -3'
miRNA:   3'- caUUAUUACGGCGUGuCACUgUUUCG- -5'
8664 5' -45 NC_002229.2 + 3173 0.8 0.868325
Target:  5'- -cGAUAGUGCCGCGC-GUGAaAGAGUg -3'
miRNA:   3'- caUUAUUACGGCGUGuCACUgUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.