miRNA: 3'- -CCAGUACGacaGUCUUGGUaa -5'
miRNA: 3'- -CCAGUACGacaGUCUUGGUaa -5'
miRNA: 3'- -CCAGUACGACAGUCUUGGUAA- -5'
miRNA: 3'- -CCAGUACGACAGUCUUGGUAA- -5'
Results 1 - 4 of 4 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 8668 | 3' | -41.9 | NC_002229.2 | + | 137825 | 0.72 | 0.999563 |
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Target: 5'- cGGUCGUGCgcgCGGGGCCGc- -3' miRNA: 3'- -CCAGUACGacaGUCUUGGUaa -5' |
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| 8668 | 3' | -41.9 | NC_002229.2 | + | 886 | 0.72 | 0.999563 |
|
Target: 5'- cGGUCGUGCgcgCGGGGCCGc- -3' miRNA: 3'- -CCAGUACGacaGUCUUGGUaa -5' |
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| 8668 | 3' | -41.9 | NC_002229.2 | + | 5727 | 1.02 | 0.124138 |
|
Target: 5'- aGGUCAUGCUGUCAGAACCAUUc -3' miRNA: 3'- -CCAGUACGACAGUCUUGGUAA- -5' |
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| 8668 | 3' | -41.9 | NC_002229.2 | + | 132985 | 1.02 | 0.124138 |
|
Target: 5'- aGGUCAUGCUGUCAGAACCAUUc -3' miRNA: 3'- -CCAGUACGACAGUCUUGGUAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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