Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 867 | 3' | -54.4 | NC_000898.1 | + | 5268 | 0.67 | 0.952729 |
|
Target: 5'- --cACGGGCUcGCGcGUGGGccaaucgcGCCCCGUc -3' miRNA: 3'- ggaUGCCUGA-UGC-CAUCUu-------CGGGGCG- -5' |
|||||||
| 867 | 3' | -54.4 | NC_000898.1 | + | 158435 | 0.67 | 0.952729 |
|
Target: 5'- --cACGGGCUcGCGcGUGGGccaaucgcGCCCCGUc -3' miRNA: 3'- ggaUGCCUGA-UGC-CAUCUu-------CGGGGCG- -5' |
|||||||
| 867 | 3' | -54.4 | NC_000898.1 | + | 58803 | 0.67 | 0.948635 |
|
Target: 5'- aCU-CGGugUACGGUgucacGGGAGCggCGCa -3' miRNA: 3'- gGAuGCCugAUGCCA-----UCUUCGggGCG- -5' |
|||||||
| 867 | 3' | -54.4 | NC_000898.1 | + | 4770 | 0.67 | 0.934973 |
|
Target: 5'- gUCUGCGGACcccgauguaaACGGgcGAAuCCgCCGCg -3' miRNA: 3'- -GGAUGCCUGa---------UGCCauCUUcGG-GGCG- -5' |
|||||||
| 867 | 3' | -54.4 | NC_000898.1 | + | 157938 | 0.67 | 0.934973 |
|
Target: 5'- gUCUGCGGACcccgauguaaACGGgcGAAuCCgCCGCg -3' miRNA: 3'- -GGAUGCCUGa---------UGCCauCUUcGG-GGCG- -5' |
|||||||
| 867 | 3' | -54.4 | NC_000898.1 | + | 17218 | 0.68 | 0.913477 |
|
Target: 5'- uUUGCGGACUGCGGUuaugAGAAGauuggaaaaauaUCCaUGCg -3' miRNA: 3'- gGAUGCCUGAUGCCA----UCUUC------------GGG-GCG- -5' |
|||||||
| 867 | 3' | -54.4 | NC_000898.1 | + | 1248 | 0.71 | 0.78368 |
|
Target: 5'- --gACGGAuCUGcCGcGUGGAAGCCgCUGCa -3' miRNA: 3'- ggaUGCCU-GAU-GC-CAUCUUCGG-GGCG- -5' |
|||||||
| 867 | 3' | -54.4 | NC_000898.1 | + | 154415 | 0.71 | 0.78368 |
|
Target: 5'- --gACGGAuCUGcCGcGUGGAAGCCgCUGCa -3' miRNA: 3'- ggaUGCCU-GAU-GC-CAUCUUCGG-GGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home