Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8675 | 5' | -42.1 | NC_002229.2 | + | 164137 | 0.68 | 1 |
|
Target: 5'- aACAUAAAUGUAGg--UGUCAgcUGCg -3' miRNA: 3'- -UGUGUUUACAUCauaACAGUgcAUGg -5' |
|||||||
| 8675 | 5' | -42.1 | NC_002229.2 | + | 90826 | 0.69 | 1 |
|
Target: 5'- gAUACAGAcUGUAGUAUUGUguuuUGUGCg -3' miRNA: 3'- -UGUGUUU-ACAUCAUAACAgu--GCAUGg -5' |
|||||||
| 8675 | 5' | -42.1 | NC_002229.2 | + | 153495 | 0.69 | 1 |
|
Target: 5'- -gGCAAAUGUAGgggUG-CugGUACa -3' miRNA: 3'- ugUGUUUACAUCauaACaGugCAUGg -5' |
|||||||
| 8675 | 5' | -42.1 | NC_002229.2 | + | 148477 | 0.68 | 1 |
|
Target: 5'- aACAUAAAUGUAGg--UGUCAgcUGCg -3' miRNA: 3'- -UGUGUUUACAUCauaACAGUgcAUGg -5' |
|||||||
| 8675 | 5' | -42.1 | NC_002229.2 | + | 97488 | 0.66 | 1 |
|
Target: 5'- aGC-CAGAUGcAGaaaauaUAUUGUCACGUGgCu -3' miRNA: 3'- -UGuGUUUACaUC------AUAACAGUGCAUgG- -5' |
|||||||
| 8675 | 5' | -42.1 | NC_002229.2 | + | 53247 | 1.14 | 0.04755 |
|
Target: 5'- uACACAAAUGUAGUAUUGUCACGUACCc -3' miRNA: 3'- -UGUGUUUACAUCAUAACAGUGCAUGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home