miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8676 3' -53.5 NC_002229.2 + 104873 0.66 0.976267
Target:  5'- aAUUcGGCACCcgCGUaCCUAUCAGCa -3'
miRNA:   3'- -UGAcUUGUGGuaGCGaGGAUGGUCGg -5'
8676 3' -53.5 NC_002229.2 + 143541 0.68 0.940592
Target:  5'- --aGGAuCACCAUCGUUCgUuccgcGCCAGUCu -3'
miRNA:   3'- ugaCUU-GUGGUAGCGAGgA-----UGGUCGG- -5'
8676 3' -53.5 NC_002229.2 + 142993 0.68 0.940592
Target:  5'- gACUGGGCAgaucugCGUCGCUCCuUGCUAGaaaCg -3'
miRNA:   3'- -UGACUUGUg-----GUAGCGAGG-AUGGUCg--G- -5'
8676 3' -53.5 NC_002229.2 + 169074 0.68 0.940592
Target:  5'- --aGGAuCACCAUCGUUCgUuccgcGCCAGUCu -3'
miRNA:   3'- ugaCUU-GUGGUAGCGAGgA-----UGGUCGG- -5'
8676 3' -53.5 NC_002229.2 + 169621 0.68 0.940592
Target:  5'- gACUGGGCAgaucugCGUCGCUCCuUGCUAGaaaCg -3'
miRNA:   3'- -UGACUUGUg-----GUAGCGAGG-AUGGUCg--G- -5'
8676 3' -53.5 NC_002229.2 + 24897 0.68 0.935751
Target:  5'- aACUc--CGCCAUCGUUCaUUACUGGCCu -3'
miRNA:   3'- -UGAcuuGUGGUAGCGAG-GAUGGUCGG- -5'
8676 3' -53.5 NC_002229.2 + 41272 0.68 0.925336
Target:  5'- uACUGGACGucgcuguuauCCGUCGUguugCCUACguGCa -3'
miRNA:   3'- -UGACUUGU----------GGUAGCGa---GGAUGguCGg -5'
8676 3' -53.5 NC_002229.2 + 107668 0.69 0.901581
Target:  5'- aACUauGC-CCAUUGCUUCUGCCAGaUCg -3'
miRNA:   3'- -UGAcuUGuGGUAGCGAGGAUGGUC-GG- -5'
8676 3' -53.5 NC_002229.2 + 138042 0.69 0.888266
Target:  5'- --cGGACGgCGUCGCUCCcacacGCgCGGCCc -3'
miRNA:   3'- ugaCUUGUgGUAGCGAGGa----UG-GUCGG- -5'
8676 3' -53.5 NC_002229.2 + 670 0.69 0.888266
Target:  5'- --cGGACGgCGUCGCUCCcacacGCgCGGCCc -3'
miRNA:   3'- ugaCUUGUgGUAGCGAGGa----UG-GUCGG- -5'
8676 3' -53.5 NC_002229.2 + 53137 0.69 0.881261
Target:  5'- uAUUGGACGCCAacaGUUUggaUACCGGCCg -3'
miRNA:   3'- -UGACUUGUGGUag-CGAGg--AUGGUCGG- -5'
8676 3' -53.5 NC_002229.2 + 36069 0.7 0.851025
Target:  5'- uCUGGAUACaagcuuGUCGCUCCUuuuuUUAGCCg -3'
miRNA:   3'- uGACUUGUGg-----UAGCGAGGAu---GGUCGG- -5'
8676 3' -53.5 NC_002229.2 + 38381 0.7 0.842943
Target:  5'- uGCUaGAguuGCACUuaggcuUCGUUgCUGCCAGCCa -3'
miRNA:   3'- -UGA-CU---UGUGGu-----AGCGAgGAUGGUCGG- -5'
8676 3' -53.5 NC_002229.2 + 55040 0.71 0.80873
Target:  5'- cACUGAgauccuagACA-CAUCGCUUCUGCauaaAGCCg -3'
miRNA:   3'- -UGACU--------UGUgGUAGCGAGGAUGg---UCGG- -5'
8676 3' -53.5 NC_002229.2 + 67241 1.11 0.004116
Target:  5'- aACUGAACACCAUCGCUCCUACCAGCCc -3'
miRNA:   3'- -UGACUUGUGGUAGCGAGGAUGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.